Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_H24
         (889 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   2.8  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   2.8  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   6.5  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   8.6  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   8.6  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 374 TFCRLFPLHYL 342
           TFCR+FP H +
Sbjct: 210 TFCRVFPFHLM 220


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 374 TFCRLFPLHYL 342
           TFCR+FP H +
Sbjct: 210 TFCRVFPFHLM 220


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 497 ATPNYSTPIINTTYVAS 547
           A P YS+ +INT  + S
Sbjct: 98  ADPQYSSAVINTNVIVS 114


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
 Frame = -2

Query: 396 NTDTKNRHILPAVPVTLFTLLASRRSMHHALF-ISGSGVNCL--------FDKQTPRYPK 244
           N   +N ++L A+      +L +  ++ H  F I G+ VN L        FD Q   +  
Sbjct: 368 NNTQRNEYLL-ALSDRNQNVLNNDLNLEHVNFQILGANVNDLIRNSRCANFDNQDNNHYN 426

Query: 243 HKHNRSR*RNK 211
           H HN++R  +K
Sbjct: 427 HNHNQARHSSK 437


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 293 PDINSAWCIDLLEASNVNSVTG 358
           P+ +  W I  LEA  +N  TG
Sbjct: 516 PNYSVNWTIGQLEAEVINCTTG 537


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 240,295
Number of Sequences: 438
Number of extensions: 5615
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)