Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_H22
         (889 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    25   0.92 
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    25   0.92 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    25   1.2  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   2.8  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   2.8  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   2.8  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   6.5  

>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 25.0 bits (52), Expect = 0.92
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
 Frame = +2

Query: 272 VVVVDGCPQVGPE---RLEKLQSVINKIFSK-FGKIVNEY 379
           +V+   CPQ  PE   +++K+ S I + + K + KIV +Y
Sbjct: 74  LVLRGACPQCSPEETRQIKKVLSHIQRTYPKEWSKIVQQY 113


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 25.0 bits (52), Expect = 0.92
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
 Frame = +2

Query: 272 VVVVDGCPQVGPE---RLEKLQSVINKIFSK-FGKIVNEY 379
           +V+   CPQ  PE   +++K+ S I + + K + KIV +Y
Sbjct: 74  LVLRGACPQCSPEETRQIKKVLSHIQRTYPKEWSKIVQQY 113


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = +2

Query: 500 FLVNLFTDFQKYSDIPKEWEPPAPQPFKVQSDLQWYLMDPD-AYDQFLGWHWD 655
           F V L T    Y     EW+PPA      + D++++  D      +F  W +D
Sbjct: 125 FEVTLATKATIYHQGLVEWKPPAIYKSSCEIDVEYFPFDEQTCVLKFGSWTYD 177


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +2

Query: 551 EWEPPAPQPFKVQSDLQWYLMDPD-AYDQFLGWHWD 655
           EW+PPA      + D++++  D      +F  W +D
Sbjct: 138 EWKPPAIYKSSCEIDVEYFPFDEQTCVMKFGSWTYD 173


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +2

Query: 296 QVGPERLEKLQSVINKIFSKFGKIVNE 376
           Q+ P+R++  Q   N++++   KIV+E
Sbjct: 324 QITPKRIQYAQHKENELYANLMKIVHE 350


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +2

Query: 296 QVGPERLEKLQSVINKIFSKFGKIVNE 376
           Q+ P+R++  Q   N++++   KIV+E
Sbjct: 362 QITPKRIQYAQHKENELYANLMKIVHE 388


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 575 PFKVQSDLQWYLMDPDAYDQFLGWHWDWCG 664
           PF V + ++ +L +PDA   FL   + W G
Sbjct: 387 PFFVLALVRPFLKNPDAIPAFLSSLFLWLG 416


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 249,382
Number of Sequences: 438
Number of extensions: 5855
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)