Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_H14
         (887 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   3.7  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   8.6  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   8.6  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   8.6  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 778 WAVCTKPPFSPTXAP 822
           W V   PP+SP  AP
Sbjct: 264 WDVLPHPPYSPDLAP 278


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 478 SHVLSCVIP*FLWITVLPPLSELIPLAA 395
           S +LS V+   L   +LPP S ++PL A
Sbjct: 270 SILLSLVVFLLLVSKILPPTSLVLPLIA 297


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 709 PEGRKADRYPVSGRGRNRRAHEG 641
           P G     Y +SG G+   A+EG
Sbjct: 28  PLGAIKGYYKISGNGKQYEAYEG 50


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 709 PEGRKADRYPVSGRGRNRRAHEG 641
           P G     Y +SG G+   A+EG
Sbjct: 28  PLGAIKGYYKISGNGKQYEAYEG 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,520
Number of Sequences: 438
Number of extensions: 4600
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)