Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_H12
         (889 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    24   1.6  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   2.8  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   6.5  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    22   8.6  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    22   8.6  

>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +1

Query: 487 CVVCKAQMPDPKTYKQHFENKHPKND 564
           C  C+       + K+HF++KH ++D
Sbjct: 8   CPYCRRNFSCYYSLKRHFQDKHEQSD 33


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 470 RHLSMFVWFVRPRCLTLRLTNSILRTNTL 556
           R +S +  F RP  +TL     + R NTL
Sbjct: 327 REISTYFTFTRPCGITLTFHEILKRANTL 355


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/20 (35%), Positives = 10/20 (50%)
 Frame = -1

Query: 466 VQLSSGRWHCAPAVSSFWTS 407
           +QL+ G W   P +   W S
Sbjct: 97  LQLTGGTWELGPMLCDSWVS 116


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 446 VALCPCCFFILDIFS 402
           +AL P CF + ++FS
Sbjct: 6   IALVPVCFLLGEVFS 20


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 446 VALCPCCFFILDIFS 402
           +AL P CF + ++FS
Sbjct: 6   IALVPVCFLLGEVFS 20


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,935
Number of Sequences: 438
Number of extensions: 3379
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)