Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_H11
         (890 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    27   0.30 
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   3.7  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   3.7  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   8.6  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 26.6 bits (56), Expect = 0.30
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -1

Query: 179 SWIFSYFGYP*ACGTQNSDITGIKDDVEQTIERTP 75
           +W  +    P  C T+N D T I  D+   I +TP
Sbjct: 13  TWELNATNSPHTCRTKNGDYTKIMPDILTAIGQTP 47


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 709 YN*AVWWHFSVQXESVLYRSNCA 641
           YN AVW  F+V  +  LY  + A
Sbjct: 123 YNTAVWARFNVNEQMYLYALSVA 145


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 709 YN*AVWWHFSVQXESVLYRSNCA 641
           YN AVW  F+V  +  LY  + A
Sbjct: 123 YNTAVWARFNVNEQMYLYALSVA 145


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +2

Query: 752 VNIDFEPFKPINTSLYLCDNK 814
           V++  +   P+NT +Y+ D+K
Sbjct: 190 VSLVVQAMDPVNTIVYMADDK 210


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 244,134
Number of Sequences: 438
Number of extensions: 5184
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)