Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_H04
         (879 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   4.9  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    22   6.5  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   8.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   8.6  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -3

Query: 334 LFSVSLTLSFQKLLTAASLSHSCHYV*SNKFCS*MHQDPSV 212
           +F ++L+   Q L  +A  SH+ +YV + +F    +Q  +V
Sbjct: 251 IFGMALSPLTQNLYYSALSSHNLNYVNTEQFVKSQYQANNV 291


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -1

Query: 201 NTFIHKNNIFSFSIGRNC 148
           N  IH NN + ++   NC
Sbjct: 87  NKTIHNNNNYKYNYNNNC 104


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 219 LLYCKPNTFIHKNNIFSFSIGRNCTSY 139
           LL+ + +  +  +N F FS   NC +Y
Sbjct: 12  LLFWQNSASLENDNEFGFSYLLNCKNY 38


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -2

Query: 776 PLYL*WSNLARALFIILDRSLSSSM 702
           P Y+ W+N  R +F ++D    S +
Sbjct: 475 PRYIKWTNRERGVFKLVDSKAVSRL 499


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,626
Number of Sequences: 438
Number of extensions: 4529
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)