Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_H01
         (874 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   4.9  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    23   4.9  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   6.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   8.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   8.5  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   8.5  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   8.5  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/44 (25%), Positives = 17/44 (38%)
 Frame = +1

Query: 532 ENDNDDSANGNLMSVDNDPSPNNVVQRISDEDEESIPMNSKLSN 663
           +N N D+ N N  + DN  +      R +D  +     N    N
Sbjct: 433 DNQNADNQNANNQNADNQNANKQNGNRQNDNRQNDNKQNGNRQN 476


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +1

Query: 616 SDEDEESIPMNSKLSNKPLGTSKCLMLIMQ 705
           +D   + +  NS+L+ KP   S C++  +Q
Sbjct: 198 TDMTAQWLKENSRLALKPKDVSNCVLFALQ 227


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -1

Query: 691 SNIWRFPRAC 662
           +N+WRFP  C
Sbjct: 2   ANVWRFPYLC 11


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 703 AL*ASNIWRFPRAC 662
           A+   N+WRFP  C
Sbjct: 36  AIGLGNLWRFPYLC 49


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 703 AL*ASNIWRFPRAC 662
           A+   N+WRFP  C
Sbjct: 89  AIGLGNLWRFPYLC 102


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +1

Query: 556 NGNLMSVDNDPSPNNVVQRISDEDEESIPMNSKLSNKPLG 675
           NG+ +SV     PN   +     +E +I    +L  KP G
Sbjct: 368 NGDQVSVGRYFYPNGTEKMTLSVNESNITWPGRLQTKPEG 407


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +3

Query: 285 MSALWTXSATGYTMLCSFGKFCLPPNFICFCLHQS 389
           + A+W   A    M+ S G F L   F C  + ++
Sbjct: 586 IKAMWLRRALASLMVFSLGLFLLLDMFNCVVVEET 620


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,553
Number of Sequences: 438
Number of extensions: 3905
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)