Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_G21
         (881 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   2.1  
AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein ...    23   2.8  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   6.5  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 532 SHVXSCVIPLILWITVLPPLSELIPLAA 449
           S + S V+ L+L   +LPP S ++PL A
Sbjct: 270 SILLSLVVFLLLVSKILPPTSLVLPLIA 297


>AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein
           protein.
          Length = 87

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -3

Query: 606 GGGAYGKTPANAAFLRFLAF 547
           G   YG  P N AF RF  +
Sbjct: 68  GASGYGFVPPNQAFYRFFYY 87


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 15/73 (20%), Positives = 29/73 (39%)
 Frame = -3

Query: 780 RKSHASRREKGGQVSGKRXGSEQESARGSFQGETPGIFIVLSGFATSDLSVDFCDARQGG 601
           ++ H S   KG  +        + + +    G TP  F + +    +   +D   +R+G 
Sbjct: 597 KREHRSSSTKGITIQEPPQWHTRSTEKRVSAG-TPAAFNISTTIYENQNCLDASSSRRGS 655

Query: 600 GAYGKTPANAAFL 562
                TPA + F+
Sbjct: 656 KIGSPTPAESTFI 668


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,937
Number of Sequences: 438
Number of extensions: 4951
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)