Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_G16
         (879 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    27   0.30 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.8  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   6.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   6.5  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          22   8.6  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          22   8.6  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          22   8.6  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   8.6  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          22   8.6  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   8.6  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   8.6  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    22   8.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   8.6  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 26.6 bits (56), Expect = 0.30
 Identities = 27/104 (25%), Positives = 46/104 (44%)
 Frame = +3

Query: 285 LIRSTLLKQLSKFTLVAYPVWGVPLILNPKSIL*XVDEYEPDTFDVLKHRINQRFTNGGN 464
           L+ S +   L+K    + P+   P++ NP+S    V  Y     DV + R+++   N   
Sbjct: 290 LVLSRMNLTLAKMEKTSKPL---PMVDNPESTGNLVYIYNNPFSDVEERRVSKTAMNSNQ 346

Query: 465 KLVNINLSDSDQLLSYSNVLGDLDIPKVKKQSLQHLKSSVEEDF 596
            + + +LS S++ L    +    DI      S   + SS E DF
Sbjct: 347 IVSDNSLSSSEEKLKQDILNLRTDI----SSSSSSISSSEENDF 386


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 288 IRSTLLKQLSKFTLVAYPVWGVPL 359
           +RS  + +LS   LV +PVW V L
Sbjct: 889 LRSLEILRLSGNRLVTFPVWQVTL 912


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 218 LLKDSRKFYWNQRNLTTQD 162
           LLKD  K +W +R L   D
Sbjct: 179 LLKDPVKEFWERRTLQISD 197


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 218 LLKDSRKFYWNQRNLTTQD 162
           LLKD  K +W +R L   D
Sbjct: 232 LLKDPVKEFWERRTLQISD 250


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 14/58 (24%), Positives = 21/58 (36%)
 Frame = -1

Query: 264 SEFSSTERPREAENISFKRLSKVLLEPEKLNDSGLWRMLSSPEALIPIIEEIKKTHTD 91
           S+ S +  P      +    SK  +  EKL  S    +   PE       E++K   D
Sbjct: 74  SKRSKSRSPESRGRSNASNTSKTFILSEKLESSDGTSLFRGPEGTQVSATELRKIKVD 131


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 14/58 (24%), Positives = 21/58 (36%)
 Frame = -1

Query: 264 SEFSSTERPREAENISFKRLSKVLLEPEKLNDSGLWRMLSSPEALIPIIEEIKKTHTD 91
           S+ S +  P      +    SK  +  EKL  S    +   PE       E++K   D
Sbjct: 74  SKRSKSRSPESRGRSNASNTSKTFILSEKLESSDGTSLFRGPEGTQVSATELRKIKVD 131


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 14/58 (24%), Positives = 21/58 (36%)
 Frame = -1

Query: 264 SEFSSTERPREAENISFKRLSKVLLEPEKLNDSGLWRMLSSPEALIPIIEEIKKTHTD 91
           S+ S +  P      +    SK  +  EKL  S    +   PE       E++K   D
Sbjct: 74  SKRSKSRSPESRGRSNASNTSKTFILSEKLESSDGTSLFRGPEGTQVSATELRKIKVD 131


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 14/58 (24%), Positives = 21/58 (36%)
 Frame = -1

Query: 264 SEFSSTERPREAENISFKRLSKVLLEPEKLNDSGLWRMLSSPEALIPIIEEIKKTHTD 91
           S+ S +  P      +    SK  +  EKL  S    +   PE       E++K   D
Sbjct: 74  SKRSKSRSPESRGRSNASNTSKTFILSEKLESSDGTSLFRGPEGTQVSATELRKIKVD 131


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 14/58 (24%), Positives = 21/58 (36%)
 Frame = -1

Query: 264 SEFSSTERPREAENISFKRLSKVLLEPEKLNDSGLWRMLSSPEALIPIIEEIKKTHTD 91
           S+ S +  P      +    SK  +  EKL  S    +   PE       E++K   D
Sbjct: 74  SKRSKSRSPESRGRSNASNTSKTFILSEKLESSDGTSLFRGPEGTQVSATELRKIKVD 131


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 14/58 (24%), Positives = 21/58 (36%)
 Frame = -1

Query: 264 SEFSSTERPREAENISFKRLSKVLLEPEKLNDSGLWRMLSSPEALIPIIEEIKKTHTD 91
           S+ S +  P      +    SK  +  EKL  S    +   PE       E++K   D
Sbjct: 74  SKRSKSRSPESRGRSNASNTSKTFILSEKLESSDGTSLFRGPEGTQVSATELRKIKVD 131


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 14/58 (24%), Positives = 21/58 (36%)
 Frame = -1

Query: 264 SEFSSTERPREAENISFKRLSKVLLEPEKLNDSGLWRMLSSPEALIPIIEEIKKTHTD 91
           S+ S +  P      +    SK  +  EKL  S    +   PE       E++K   D
Sbjct: 74  SKRSKSRSPESRGRSNASNTSKTFILSEKLESSDGTSLFRGPEGTQVSATELRKIKVD 131


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 14/58 (24%), Positives = 21/58 (36%)
 Frame = -1

Query: 264 SEFSSTERPREAENISFKRLSKVLLEPEKLNDSGLWRMLSSPEALIPIIEEIKKTHTD 91
           S+ S +  P      +    SK  +  EKL  S    +   PE       E++K   D
Sbjct: 74  SKRSKSRSPESRGRSNASNTSKTFILSEKLESSDGTSLFRGPEGTQVSATELRKIKVD 131


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +3

Query: 399 YEPDTFDVLKHRINQRFTNGGNKLVNINLSDSDQLLSYSNVL 524
           +E D+F V KH    R +  G    N+  + +   +  S V+
Sbjct: 707 WEGDSFKVSKHEEVSRTSTAGQFPTNVATTVTSMSIDQSTVI 748



 Score = 21.8 bits (44), Expect = 8.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 348 PRLDMPLM*TSTTASGVLNGSVINNP 271
           P + +P+   STT +GV+   VI  P
Sbjct: 827 PYMFLPVSYMSTTMAGVIYPPVIGTP 852


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,809
Number of Sequences: 438
Number of extensions: 3985
Number of successful extensions: 19
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)