Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_G06
         (1055 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK126025-1|BAC86399.1|  804|Homo sapiens protein ( Homo sapiens ...    39   0.027
BC107139-1|AAI07140.1|  767|Homo sapiens patched domain containi...    38   0.081

>AK126025-1|BAC86399.1|  804|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44037 fis, clone TESTI4028823. ).
          Length = 804

 Score = 39.1 bits (87), Expect = 0.027
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
 Frame = +2

Query: 302 CKLTIVDDVLNRSFYKLGLAVGRQPGYFIIIPVLXTLLMVTGYXRIHYD--MDPEYXFSP 475
           C    ++ +L+R+F  LG  VG  P  F++ P++ T  + TG+  +  D   D E  ++P
Sbjct: 114 CHTDCLEGLLSRTFQWLGWQVGAHPWIFLLAPLMLTAALGTGFLYLPKDEEEDLEEHYTP 173

Query: 476 VSXQGKLXR 502
           V    K  R
Sbjct: 174 VGSPAKAER 182


>BC107139-1|AAI07140.1|  767|Homo sapiens patched domain containing
           3 protein.
          Length = 767

 Score = 37.5 bits (83), Expect = 0.081
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = +2

Query: 302 CKLTIVDDVLNRSFYKLGLAVGRQPGYFIIIPVLXTLLMVTGYXRIHYD--MDPEYXFSP 475
           C    ++ +L+R+F  LG  VG  P  F++ P++ T    TG+  +  D   D E  ++P
Sbjct: 114 CHTDCLEGLLSRTFQWLGWQVGAHPWIFLLAPLMLTAAPGTGFLYLPKDEEEDLEEHYTP 173

Query: 476 VSXQGKLXR 502
           V    K  R
Sbjct: 174 VGSPAKAER 182


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,454,192
Number of Sequences: 237096
Number of extensions: 1361505
Number of successful extensions: 1673
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1673
length of database: 76,859,062
effective HSP length: 91
effective length of database: 55,283,326
effective search space used: 14373664760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)