Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_G06
         (1055 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    24   2.6  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    24   2.6  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    24   2.6  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    24   2.6  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   3.5  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   8.0  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   8.0  

>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.8 bits (49), Expect = 2.6
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +1

Query: 88  RTRTSEPKLSNETDXTSLR*NVFKFSDVKNNSFX*SLY 201
           R R+ EPK+ +     ++  N +K+ +  NN++   LY
Sbjct: 73  RERSREPKIISSLSNNTIHNNNYKY-NYNNNNYNKKLY 109


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.8 bits (49), Expect = 2.6
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +1

Query: 88  RTRTSEPKLSNETDXTSLR*NVFKFSDVKNNSFX*SLY 201
           R R+ EPK+ +     ++  N +K+ +  NN++   LY
Sbjct: 73  RERSREPKIISSLSNNTIHNNNYKY-NYNNNNYNKKLY 109


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.8 bits (49), Expect = 2.6
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +1

Query: 88  RTRTSEPKLSNETDXTSLR*NVFKFSDVKNNSFX*SLY 201
           R R+ EPK+ +     ++  N +K+ +  NN++   LY
Sbjct: 73  RERSREPKIISSLSNNTIHNNNYKY-NYNNNNYNKKLY 109


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.8 bits (49), Expect = 2.6
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +1

Query: 88  RTRTSEPKLSNETDXTSLR*NVFKFSDVKNNSFX*SLY 201
           R R+ EPK+ +     ++  N +K+ +  NN++   LY
Sbjct: 73  RERSREPKIISSLSNNTIHNNNYKY-NYNNNNYNKKLY 109


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.4 bits (48), Expect = 3.5
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = +3

Query: 414 SW*PDIXGFIMTWTRNIXFRLLAXKESW 497
           SW P I G I  WT      L+   E W
Sbjct: 475 SWMPSIRGAIQQWTCRQPEPLIELIEHW 502


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 8.0
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +1

Query: 88  RTRTSEPKLSNETDXTSLR*NVFKFSDVKNN 180
           R R+ EPK+ +     ++  N +K++   NN
Sbjct: 72  RERSREPKIISSLSNNTIHNNNYKYNYNNNN 102


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 8.0
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +1

Query: 88  RTRTSEPKLSNETDXTSLR*NVFKFSDVKNN 180
           R R+ EPK+ +     ++  N +K++   NN
Sbjct: 72  RERSREPKIISSLSNNTIHNNNYKYNYNNNN 102


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,778
Number of Sequences: 438
Number of extensions: 3117
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 35186292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)