Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_G03
         (878 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    24   1.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   4.9  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   4.9  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = -2

Query: 700 FNSRTRAVKPSRCSDSFSSTGVVPNVFLIPCQSD--PQVERIFLGLTLGNCQARSIPSKP 527
           FN  T   +   C D+ SS          P +S   P+  RI+  +T  +   RS+ + P
Sbjct: 633 FNISTTIYENQNCLDASSSRRGSKIGSPTPAESTFIPEERRIYSPITFQDVARRSVANSP 692

Query: 526 YCSANS 509
             +A+S
Sbjct: 693 TKNADS 698


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 633 TTPVDEKESEHREGFTALV 689
           T P+D+  S+  EGF A++
Sbjct: 150 TNPLDDSISQANEGFCAVI 168


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 633 TTPVDEKESEHREGFTALV 689
           T P+D+  S+  EGF A++
Sbjct: 145 TNPLDDSISQANEGFCAVI 163


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,201
Number of Sequences: 438
Number of extensions: 4552
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)