Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_F16
         (866 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyc...    53   5e-08
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce...    27   3.5  
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    26   6.0  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    26   8.0  

>SPAC5H10.06c |adh4||alcohol dehydrogenase Adh4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 422

 Score = 53.2 bits (122), Expect = 5e-08
 Identities = 37/128 (28%), Positives = 55/128 (42%), Gaps = 1/128 (0%)
 Frame = +2

Query: 389 ASC-QCPAHGYRGNIQVSNATPLKDYAFEIKCSTVRYGLGVTREVGQDLVNLNAKNVCVM 565
           +SC Q   +G +     S A P+   AF I    + +G G   E  + +     KN  ++
Sbjct: 24  SSCNQSFTNGLKHQSTSSKAMPVS--AFYIPSFNL-FGKGCLAEAAKQIKMSGFKNTLIV 80

Query: 566 TDPNVASLSPMKAVLDSLTRNGINYKVYDKVRVEPTDSSFKDAIHFAKEGNFDSFVAIXG 745
           TDP +  +     V   L    I   +YD V+  PT  +    +   K+ N DS V+I G
Sbjct: 81  TDPGIIKVGLYDKVKALLEEQSITVHLYDGVQPNPTVGNVNQGLEIVKKENCDSMVSIGG 140

Query: 746 GSVMDXVK 769
           GS  D  K
Sbjct: 141 GSAHDCAK 148


>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 760

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 503 GVTREVGQDLVNLNAKNVCVMTDPNVASLSPMKAV 607
           GVT+E+G  +      N+C+  DP VA    +K +
Sbjct: 382 GVTKELGDGMRIRGDINICLTGDPGVAKSQLLKYI 416


>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +2

Query: 380 INIASCQCPAHGYRGNIQVSNATPLKDYAFEIKCSTVRYGL 502
           I +    C A+G + NI     T LKD    + C   RYG+
Sbjct: 138 IVVGESNCSAYGMKENIY----TCLKDLYCSVSCCDCRYGI 174


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +2

Query: 668  PTDSSFKDAIHFAKEGNFDSFVAIXGGS 751
            PT SSF D IHFA   N    +   G +
Sbjct: 2444 PTVSSFDDTIHFASGINAPKVITCLGSN 2471


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,968,446
Number of Sequences: 5004
Number of extensions: 54472
Number of successful extensions: 133
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)