Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_F07
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.51 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   1.5  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   8.2  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +2

Query: 455 PPPXGXXGXXXXPPPPPRXXKNXGXPR 535
           PPP G  G    PPPPP    + G  R
Sbjct: 765 PPPPGVAGAGPPPPPPPPPAVSAGGSR 791



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/37 (32%), Positives = 13/37 (35%)
 Frame = +2

Query: 773 PPQNPPPXPFXXPXXXLRXXXPXPXPPGRXXPXPXNP 883
           P   P P P   P   +    P P PPG     P  P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = +2

Query: 773 PPQNPPPXPFXXPXXXLRXXXPXPXPPG 856
           PP NPPP P   P        P P PPG
Sbjct: 5   PPGNPPPPP-PPPGFEPPSQPPPPPPPG 31


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = -3

Query: 855 PGGXGXGXFXLXKXXGXXNGXGGGFWGG 772
           PGG G G        G   G  GGF GG
Sbjct: 237 PGGFGGGPGGFGGGLGGFGGGPGGFGGG 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,429,535
Number of Sequences: 5004
Number of extensions: 15182
Number of successful extensions: 78
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)