Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_F04
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.21 |dcp1||mRNA decapping complex subunit Dcp1|Schizosacc...    62   1e-10
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   2.7  
SPAC2C4.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.1  
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    26   8.1  
SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase |...    26   8.1  

>SPBC3B9.21 |dcp1||mRNA decapping complex subunit
           Dcp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 127

 Score = 62.1 bits (144), Expect = 1e-10
 Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 2/121 (1%)
 Frame = +1

Query: 283 SMNFAALKRADPYAREIVDSATHVALYTFE--ENEWEKTNIEGALFVYSRNGEPYHSLVI 456
           ++N   LK   P    I+D A+HVA+Y F+    +W KT+IEG  F+  ++       VI
Sbjct: 10  AVNLQVLKFHYPEIESIIDIASHVAVYQFDVGSQKWLKTSIEGTFFLV-KDQRARVGYVI 68

Query: 457 MNRLNTNNLIEPVSKGIELQLKEPFLLYRNAKCRIYGIWFYDKDECVRVATKLNTLVKES 636
           +NR +  NL   ++    + L + +L++R     + G+W +D ++  R+      +VKES
Sbjct: 69  LNRNSPENLYLFINHPSNVHLVDRYLIHRTENQHVVGLWMFDPNDMSRIF----NIVKES 124

Query: 637 I 639
           +
Sbjct: 125 L 125


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
 Frame = -1

Query: 480 VVSVQPVHNH*TVVWFTISTVHKQSTLNVGFLPFVLFKCVKGNVGSTIDNFTSIWIC-PL 304
           V S+   H H    WF  + +       V F+P  L+   K N+ +    F ++  C PL
Sbjct: 113 VTSIPEEHRHLPSQWFPSNKIRTTKYTPVSFIPKNLWNQFK-NIANAFFLFVTLLQCIPL 171

Query: 303 *CSE 292
            C E
Sbjct: 172 FCPE 175


>SPAC2C4.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 166

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +1

Query: 310 ADPYAREIVDSATHVALYTFEENEWEKTNIEGALFVYSRNGEPYHSLVIMNRLNTNNL 483
           +D YA+ + D   HVA YT   NE      +  + +Y       +SL  +N  N  +L
Sbjct: 94  SDCYAKGMDDIMKHVATYTATMNERMNACHKEYIKMYEALASERNSLYKINEQNVQSL 151


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -2

Query: 488 SIRLLVFSLFIITKLWYGS--PFLLYTNKAPSMLVFSHSF 375
           SI L + S F++ K W  S  PFL+Y   APS+ +    F
Sbjct: 467 SILLSIISSFLV-KHWRESKVPFLVYFLSAPSLAILYSCF 505


>SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 500

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -2

Query: 533 KNGSFNCSSIPLDTGSIRLLVFSLFIITKLWYGSPFLLYTNKA 405
           K G  +  ++P  +          FI T+ W G PFLL   KA
Sbjct: 300 KPGYLDDETVPKGSRCPTYSAIPCFIDTERWRGVPFLLKAGKA 342


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,130,109
Number of Sequences: 5004
Number of extensions: 61309
Number of successful extensions: 163
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)