Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_F04
(876 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0989 + 8348706-8348882,8348988-8349028,8350071-8350120,835... 116 3e-26
12_01_0366 + 2779754-2779882,2780007-2780047,2780163-2780212,278... 113 2e-25
11_01_0342 + 2548147-2548275,2548385-2548425,2548521-2548570,254... 112 4e-25
03_06_0595 - 34955345-34955464,34955495-34956256,34956384-349565... 65 6e-11
02_05_0706 + 31082924-31083010,31084208-31084576,31084645-31089033 34 0.13
01_01_0763 + 5898719-5899021,5899124-5899518,5899619-5899703,589... 29 4.9
02_05_0318 + 27856187-27856879,27857050-27857385,27858743-27859495 29 6.5
03_02_0349 - 7722461-7723069,7723494-7724221,7724281-7724641,772... 28 8.5
>07_01_0989 +
8348706-8348882,8348988-8349028,8350071-8350120,
8350502-8350646,8351570-8351626,8352141-8352261,
8352436-8352945,8353242-8353289
Length = 382
Score = 116 bits (278), Expect = 3e-26
Identities = 53/137 (38%), Positives = 80/137 (58%), Gaps = 2/137 (1%)
Frame = +1
Query: 262 MADTGLRSMNFAALKRADPYAREIVDSATHVALYTFEEN--EWEKTNIEGALFVYSRNGE 435
M + G R +N L+R DP +I+ +A HV LY F+ N +W + ++EG+LFV RN +
Sbjct: 17 MDEEGTRVLNITVLQRLDPAVEDILITAGHVTLYDFDTNLNQWSRKDVEGSLFVVKRNAQ 76
Query: 436 PYHSLVIMNRLNTNNLIEPVSKGIELQLKEPFLLYRNAKCRIYGIWFYDKDECVRVATKL 615
P V+MNR NT+NL+E + E QL+ P+++YRNA + GIWFY+ EC VA
Sbjct: 77 PRFQFVVMNRRNTDNLVEDLLGDFEYQLQVPYIMYRNAAQEVIGIWFYNSQECEEVANLF 136
Query: 616 NTLVKESIKQSQGETMP 666
+ ++ K + P
Sbjct: 137 SRILNAFSKATPKPKAP 153
>12_01_0366 +
2779754-2779882,2780007-2780047,2780163-2780212,
2780824-2780968,2781298-2781354,2781448-2781571,
2781798-2782259,2782493-2782564
Length = 359
Score = 113 bits (272), Expect = 2e-25
Identities = 50/113 (44%), Positives = 73/113 (64%), Gaps = 2/113 (1%)
Frame = +1
Query: 274 GLRSMNFAALKRADPYAREIVDSATHVALYTF--EENEWEKTNIEGALFVYSRNGEPYHS 447
G R +N L+R DP +I+ +A HV LY F E N+W + ++EG+LFV RN +P
Sbjct: 5 GTRLLNLTVLQRLDPAVEDILITAAHVTLYDFNIELNQWSRKDVEGSLFVVKRNKQPRFQ 64
Query: 448 LVIMNRLNTNNLIEPVSKGIELQLKEPFLLYRNAKCRIYGIWFYDKDECVRVA 606
++MNR NT+NL+E + E +L+ P+LLYRNA + GIWFY++ +C VA
Sbjct: 65 FIVMNRRNTDNLVEDLLSDFEFELQPPYLLYRNAAQEVNGIWFYNQQDCDAVA 117
>11_01_0342 +
2548147-2548275,2548385-2548425,2548521-2548570,
2548830-2548974,2549854-2549859,2550122-2550245,
2550422-2550877,2550960-2551013
Length = 334
Score = 112 bits (269), Expect = 4e-25
Identities = 49/114 (42%), Positives = 74/114 (64%), Gaps = 2/114 (1%)
Frame = +1
Query: 274 GLRSMNFAALKRADPYAREIVDSATHVALYTF--EENEWEKTNIEGALFVYSRNGEPYHS 447
G R +N L+R DP +I+ +A HV LY F + N+W + ++EG+LFV RN +P
Sbjct: 5 GTRLLNLTVLQRLDPAVEDILITAAHVTLYDFNIDLNQWSRKDVEGSLFVVKRNTQPRFQ 64
Query: 448 LVIMNRLNTNNLIEPVSKGIELQLKEPFLLYRNAKCRIYGIWFYDKDECVRVAT 609
++MNR NT+NL+E + E +L+ P+LLYRNA + GIWFY++ +C VA+
Sbjct: 65 FIVMNRRNTDNLVEDLLSDFEYELQPPYLLYRNAAQEVNGIWFYNQHDCEAVAS 118
>03_06_0595 -
34955345-34955464,34955495-34956256,34956384-34956507,
34957111-34957167,34958222-34958366,34958860-34958909,
34959366-34959514,34959955-34960146
Length = 532
Score = 65.3 bits (152), Expect = 6e-11
Identities = 28/68 (41%), Positives = 40/68 (58%)
Frame = +1
Query: 427 NGEPYHSLVIMNRLNTNNLIEPVSKGIELQLKEPFLLYRNAKCRIYGIWFYDKDECVRVA 606
N +P ++MNR NT NL E + G E Q++ P+++Y NA I GIWFYD EC +V
Sbjct: 115 NTQPRFQFIVMNRKNTENLTEDLLGGFEYQVQVPYIMYHNAADEITGIWFYDPQECEQVG 174
Query: 607 TKLNTLVK 630
+ + K
Sbjct: 175 YLFSRIQK 182
Score = 38.3 bits (85), Expect = 0.008
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +1
Query: 274 GLRSMNFAALKRADPYAREIVDSATHVALYTFEEN 378
G R++N L+R DP +I+ A HV LY+F++N
Sbjct: 26 GTRTLNLTVLRRLDPAVADILIIAAHVVLYSFDDN 60
>02_05_0706 + 31082924-31083010,31084208-31084576,31084645-31089033
Length = 1614
Score = 34.3 bits (75), Expect = 0.13
Identities = 28/96 (29%), Positives = 44/96 (45%)
Frame = +1
Query: 457 MNRLNTNNLIEPVSKGIELQLKEPFLLYRNAKCRIYGIWFYDKDECVRVATKLNTLVKES 636
+N L+ NNL+ KG P L ++K + D D+C ++ + VK +
Sbjct: 849 VNMLSVNNLLSQGDKGTTSAGSSP-LPEIDSKAKTENREVEDTDKCSHPPSRGDDGVKSN 907
Query: 637 IKQSQGETMPQNSVYNSSTTSTQSIDIFSMLSKAQD 744
KQ G + NS SSTTS + F++ K +D
Sbjct: 908 AKQPIGFKIDTNSNIKSSTTS-EYRSAFTVRGKVED 942
>01_01_0763 +
5898719-5899021,5899124-5899518,5899619-5899703,
5899810-5900032,5900131-5900327,5900531-5900601,
5904034-5904218,5905914-5906068,5906241-5907632,
5907973-5908269
Length = 1100
Score = 29.1 bits (62), Expect = 4.9
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Frame = -1
Query: 750 EIVLRFTQHAEDIYRLS*SCR------RIVN*ILWHGFALRLFYGLFH*CVQLRGHSHAL 589
EI++ ++ +D RLS + + IV HG L +F+G + G SH
Sbjct: 723 EIMIGYSDSGKDAGRLSAAWQLYKAQEEIVGVAERHGVKLTIFHGRGGTVGRGGGPSHLA 782
Query: 588 VLIIKPYTVNAALGVTI 538
+L P TVN +L VT+
Sbjct: 783 ILSQPPNTVNGSLRVTV 799
>02_05_0318 + 27856187-27856879,27857050-27857385,27858743-27859495
Length = 593
Score = 28.7 bits (61), Expect = 6.5
Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +1
Query: 388 KTNIEGALFVYSR-NGEPYHSLVIMNRLNTNNLIEPVSKGIELQLKEPFLLYRNAKCRIY 564
K I+G +F + + L I+ ++N +NL++ I + + +L+Y +
Sbjct: 317 KAYIDGEVFAVKKMKWDACEELKILQKVNHSNLVKLEGFCINSETGDCYLVYEYVENGSL 376
Query: 565 GIWFYDKDECVRV 603
+W D+D R+
Sbjct: 377 DLWLMDRDRARRL 389
>03_02_0349 - 7722461-7723069,7723494-7724221,7724281-7724641,
7724751-7725072,7725183-7725661,7726157-7726430,
7726598-7726884,7726966-7727388,7727545-7727890,
7728011-7728328,7729817-7731081
Length = 1803
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = -1
Query: 444 VVWFTISTVHKQSTLN-VGFLPFVLFKCVKGNVGST 340
++ FT S +K +LN +GFL F K +G++GS+
Sbjct: 1285 LIAFTNSRFNKDISLNAIGFLRFCAAKLAEGDIGSS 1320
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,774,051
Number of Sequences: 37544
Number of extensions: 339007
Number of successful extensions: 738
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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