Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_F04
         (876 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    27   0.23 
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    24   1.6  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    24   1.6  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   4.9  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              22   6.5  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   6.5  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   8.5  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 27.1 bits (57), Expect = 0.23
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 382 WEKTNIEGALFVYSRNGEPYHSLVIMNRLNTNNLIEPVSKGIE 510
           W    ++GAL  Y      +HS+V+ + LN +++   V   IE
Sbjct: 442 WNVLGVQGALLSYFIEPIYFHSIVLGSLLNPSHMYRAVCGRIE 484


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 612 VEHISERVHKTVARRNHATEFSLQFVYNFN 701
           +EHI   + KTVA++ H T+  ++ +   N
Sbjct: 142 LEHIVIGIVKTVAKKLHGTDIEMRILKTKN 171


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 612 VEHISERVHKTVARRNHATEFSLQFVYNFN 701
           +EHI   + KTVA++ H T+  ++ +   N
Sbjct: 142 LEHIVIGIVKTVAKKLHGTDIEMRILKTKN 171


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 63  VCILVLIFLYSRIPSFCVRIV 125
           V +++ +FL   +P FCV IV
Sbjct: 274 VGVIMGVFLICWVPFFCVNIV 294


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +2

Query: 311 QIHMLVKLSIVLPTLPFTHL-KRTNGRKPTLRVLC 412
           + H  + L+I +P      +  +  G +PTLR+LC
Sbjct: 47  KFHKPITLTIPVPQAANKGMINQYGGEQPTLRLLC 81


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 11/39 (28%), Positives = 16/39 (41%)
 Frame = -1

Query: 444 VVWFTISTVHKQSTLNVGFLPFVLFKCVKGNVGSTIDNF 328
           VVW +         ++V F PF   +CV      T D +
Sbjct: 119 VVWLSHGIFRSSCDIDVEFFPFDEQRCVLKWASWTYDGY 157


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 618 VQLRGHSHALVLIIKPYTVNAA 553
           V L+GH+H L L  K   V +A
Sbjct: 505 VNLKGHAHWLTLHFKDPKVESA 526


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,190
Number of Sequences: 438
Number of extensions: 4016
Number of successful extensions: 19
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)