Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_F03
         (893 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    28   2.1  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    28   2.1  
SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomy...    27   2.7  
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    27   2.7  
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc...    27   3.6  

>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = +3

Query: 51  HXKVRTLXXVCLSSGPTPPT--VSCPSMRLSPTXSVAINFVAPFSRPXXPQVPGLCPQQS 224
           H K+  L  + LSS P  P   +  P+ R +PT      +V P +RP   Q+  LC +  
Sbjct: 305 HRKIM-LSLIPLSSSPNHPIQPIGFPASRKTPT------YVPPIARPYFRQLLSLCLEYR 357

Query: 225 IXTDFPLK 248
           +    P++
Sbjct: 358 LQVTDPVE 365


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 21/83 (25%), Positives = 38/83 (45%)
 Frame = +2

Query: 308 IWPPNRSSSVGRXWSLVVARVSAIRRCQRMKQVRQSSAEPMQSSWQNAPHFLHKIIARRL 487
           I+P  R S+     S    R  ++    R K  R  +A  +   +++ PH L++    RL
Sbjct: 192 IYPSPRRSTAATLESAYEERPPSL---PRRKPSRPGTAITLPP-YESDPHMLNEKDFERL 247

Query: 488 HTHESSAPTLRHRAIL*NRNKIQ 556
               SS+P +R  ++  NR  ++
Sbjct: 248 RLESSSSPMMRRSSLNSNRRSVE 270


>SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 162

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +1

Query: 196 RSLGSVLSKASXPIFH*SHKTSPRGTPRXLFVHQLHT 306
           R+LGS L  AS P  + S + S R  PR  F+H++ T
Sbjct: 3   RALGSRLLVASRPAAYRSFQQSLRPVPR-FFIHKMST 38


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +2

Query: 263 PVXHRVCSLCISCIPIWPPNRSSSVGRXWSLVVARVSAIRRCQRMKQV 406
           P   ++CSLC   +P W     S     W+ +V RV A+++    K++
Sbjct: 175 PPSGKLCSLCEDNLPEWYFEVHSDFCLVWNDLVRRVFAVQQLINCKKL 222


>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
           binuclear cluster type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 522

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +3

Query: 87  SSGPTPPTVSCPSMRLSPTXSVAINFVAPFSRPXXPQVPGLCPQQSIXTDFPLKPQN 257
           +SG  PP+ +   +  +P  +  I  V PF +P  P V   C Q ++    P+ P N
Sbjct: 251 TSGANPPSSNNQEVTSAPIPAAPI--VLPFQQPFYPIVCPGCAQGALPQHIPV-PHN 304


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,184,198
Number of Sequences: 5004
Number of extensions: 41396
Number of successful extensions: 115
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)