Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_F02
(910 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 36 0.006
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ... 29 0.69
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 2.8
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 3.7
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 6.4
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 36.3 bits (80), Expect = 0.006
Identities = 24/92 (26%), Positives = 27/92 (29%)
Frame = +2
Query: 623 PPPPXPSKKXXXXVFXGGPXPPXKXKNXXPPQKXFXSPPXXXKXXXXXPLXGPPXXXXES 802
PP P S K PP + PP S P K P PP S
Sbjct: 1012 PPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSS 1071
Query: 803 XXPPXNXXXGSPXPPXGXXGPPLXXXXXNXPP 898
P G+P P PP+ PP
Sbjct: 1072 EIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPP 1103
Score = 31.1 bits (67), Expect = 0.23
Identities = 25/94 (26%), Positives = 27/94 (28%), Gaps = 1/94 (1%)
Frame = +2
Query: 620 APPPPXPSKKXXXXVFXGGPXPPXKXKNXXPPQKXFXSPPXXXKXXXXXPLXGPPXXXXE 799
APP P PS G P K PP P K + PP
Sbjct: 1120 APPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPK----PSVAAPPVPAPS 1175
Query: 800 SXXPP-XNXXXGSPXPPXGXXGPPLXXXXXNXPP 898
S PP G P P PP+ PP
Sbjct: 1176 SGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPP 1209
Score = 29.5 bits (63), Expect = 0.69
Identities = 25/94 (26%), Positives = 26/94 (27%), Gaps = 1/94 (1%)
Frame = +2
Query: 620 APPPPXPSKKXXXXVFXGGPXPPXKXKNXXPPQKXFXSPPXXXKXXXXXPLXGPPXXXXE 799
APP P PS G P K PP P P G P
Sbjct: 1139 APPVPKPSVAAPPVPAPSGAPPVPKPSVAAPP----VPAPSSGIPPVPKPAAGVPPVPPP 1194
Query: 800 SXXPPX-NXXXGSPXPPXGXXGPPLXXXXXNXPP 898
S PP G P P PP+ PP
Sbjct: 1195 SEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPP 1228
Score = 28.7 bits (61), Expect = 1.2
Identities = 24/99 (24%), Positives = 29/99 (29%), Gaps = 6/99 (6%)
Frame = +2
Query: 620 APPP-PXPSKKXXXXVFXGGPXPPXKXKNXXP-PQKXFXSPPXXXKXXXXXPL----XGP 781
APPP P PS + G P P P+ +PP P+ P
Sbjct: 1062 APPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAP 1121
Query: 782 PXXXXESXXPPXNXXXGSPXPPXGXXGPPLXXXXXNXPP 898
P PP G+P P P PP
Sbjct: 1122 PVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPP 1160
Score = 26.6 bits (56), Expect = 4.9
Identities = 23/94 (24%), Positives = 26/94 (27%), Gaps = 1/94 (1%)
Frame = +2
Query: 620 APPPPXPSKKXXXXVFXGGPXPPXKXKNXXPPQKXFXSPPXXXKXXXXXPLXGPPXXXXE 799
APP P PS G P K PP P K + PP
Sbjct: 1101 APPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPK----PSVAAPPVPAPS 1156
Query: 800 SXXPPXNXXXGSPXPPXGXXG-PPLXXXXXNXPP 898
P +P P G PP+ PP
Sbjct: 1157 GAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPP 1190
>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 29.5 bits (63), Expect = 0.69
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = +3
Query: 675 APXPPXXKKTVXPPKKXSXAPPXXXKXXXLXPXXAPLPP 791
A PP + PP S APP + P AP PP
Sbjct: 204 AQPPPPPPQQNYPPAASSSAPPMQYQQTAYPPQQAPYPP 242
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 2.8
Identities = 17/55 (30%), Positives = 20/55 (36%), Gaps = 6/55 (10%)
Frame = +1
Query: 676 PPPPXXXKKXXPPPKKX------RXPPXXXKXXXXXPPXXPPXXPXRIXAPSXXP 822
P PP PPP + + PP PP PP P R AP+ P
Sbjct: 352 PLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGR-SAPALPP 405
Score = 26.2 bits (55), Expect = 6.4
Identities = 22/83 (26%), Positives = 25/83 (30%), Gaps = 1/83 (1%)
Frame = +2
Query: 623 PPPPXPSKKXXXXVFXGGPXPPXKXKNXXPPQKXFXSPPXXXKXXXXXPLXGPPXXXXES 802
PP P PS + P PP + P L PP
Sbjct: 290 PPLPPPSSRVSAAALAANKKRPPPPP---PPSRRNRGKPPIGNGSSNSSLPPPPP----- 341
Query: 803 XXPPXNXXXGS-PXPPXGXXGPP 868
PP + GS P PP G PP
Sbjct: 342 --PPRSNAAGSIPLPPQGRSAPP 362
Score = 25.8 bits (54), Expect = 8.5
Identities = 34/160 (21%), Positives = 38/160 (23%), Gaps = 6/160 (3%)
Frame = +2
Query: 407 GXGGGXXAXXXXPPPPRGGXXXXWGXXPXPPXXRXXXXXQIGGGXXXKQXXXXXAXXRQX 586
G G + PPPPR G P PP R +
Sbjct: 328 GNGSSNSSLPPPPPPPRSNAA---GSIPLPPQGRSAPP------PPPPRSAPSTGRQPPP 378
Query: 587 XXSRQXXXFXXAPPPPXPSKKXXXXVFXGG----PXPPXKXKNXXPPQKXFXSPPXXXKX 754
S + APPP P + G PP PP PP
Sbjct: 379 LSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPS 438
Query: 755 XXXXPLXGPPXXXXESXXP--PXNXXXGSPXPPXGXXGPP 868
PP P P P PP PP
Sbjct: 439 LPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPP 478
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.1 bits (57), Expect = 3.7
Identities = 14/55 (25%), Positives = 19/55 (34%)
Frame = +2
Query: 683 PPXKXKNXXPPQKXFXSPPXXXKXXXXXPLXGPPXXXXESXXPPXNXXXGSPXPP 847
PP + ++ PPQ +PP P P S PP +P P
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.2 bits (55), Expect = 6.4
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = -1
Query: 466 PPPPXGXGXXXXGXXXPPXPXP 401
PPPP G G PP P P
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPP 783
Score = 25.8 bits (54), Expect = 8.5
Identities = 12/36 (33%), Positives = 12/36 (33%)
Frame = +1
Query: 676 PPPPXXXKKXXPPPKKXRXPPXXXKXXXXXPPXXPP 783
PPPP P P PP PP PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,887,599
Number of Sequences: 5004
Number of extensions: 22841
Number of successful extensions: 74
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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