Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_F01
         (886 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC031288-1|AAH31288.1|  265|Homo sapiens similar to hypothetical...    88   3e-17
BC036457-1|AAH36457.1|  385|Homo sapiens paroxysmal nonkinesigen...    31   4.2  
BC002937-1|AAH02937.1|  361|Homo sapiens paroxysmal nonkinesioge...    31   4.2  
AY358753-1|AAQ89113.1|  361|Homo sapiens AWQG2491 protein.             31   4.2  
AB033010-1|BAA86498.1|  380|Homo sapiens KIAA1184 protein protein.     31   4.2  
AK126832-1|BAC86713.1|  226|Homo sapiens protein ( Homo sapiens ...    31   7.3  

>BC031288-1|AAH31288.1|  265|Homo sapiens similar to hypothetical
           protein MGC49416 protein.
          Length = 265

 Score = 88.2 bits (209), Expect = 3e-17
 Identities = 57/157 (36%), Positives = 84/157 (53%), Gaps = 3/157 (1%)
 Frame = +1

Query: 217 NIIVDTMTAWDADKIKNALQQNQMIPEAINYVVSTHGHSDHVGNNNLFLNAKHIVGFSIS 396
           +I+VDT   W  + +  AL    + P  +  VV T+GHSDH+GN  LF  A  +V     
Sbjct: 79  HILVDTGGPWAREALLGALAGQGVAPGDVTLVVGTNGHSDHIGNLGLFPGAALLVSHDFC 138

Query: 397 F-REKYFMHPFDKGEEYKINDSVKVIPTPGH-TQSDVT-VIATTRRGEAIAITGDLFERR 567
               +Y  H   +G+  ++   ++V  TPGH  Q DV+ V+A T  G  +A  GD+FER 
Sbjct: 139 LPGGRYLPHGLGEGQPLRLGPGLEVWATPGHGGQRDVSVVVAGTALGTVVA--GDVFERD 196

Query: 568 EDIENPSIWLEAGSEDPVQQMKNRSKVADSASWIVPG 678
            D ++   W +A SEDP  Q ++R +V   A  +VPG
Sbjct: 197 GDEDS---W-QALSEDPAAQERSRKRVLVVADVVVPG 229


>BC036457-1|AAH36457.1|  385|Homo sapiens paroxysmal nonkinesigenic
           dyskinesia protein.
          Length = 385

 Score = 31.5 bits (68), Expect = 4.2
 Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 6/88 (6%)
 Frame = +1

Query: 310 VVSTHGHSDHVGNNNLFLNAKH---IVGFSISFREKYFMHPFDKGEEYKIND-SVKVIPT 477
           ++ TH H DH G N   L+ +H    V  S      Y  HP    +   +    ++ + T
Sbjct: 168 ILCTHKHWDHSGGNR-DLSRRHRDCRVYGSPQDGIPYLTHPLCHQDVVSVGRLQIRALAT 226

Query: 478 PGHTQSDVTVI--ATTRRGEAIAITGDL 555
           PGHTQ  +  +      +G +   +GDL
Sbjct: 227 PGHTQGHLVYLLDGEPYKGPSCLFSGDL 254


>BC002937-1|AAH02937.1|  361|Homo sapiens paroxysmal nonkinesiogenic
           dyskinesia protein.
          Length = 361

 Score = 31.5 bits (68), Expect = 4.2
 Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 6/88 (6%)
 Frame = +1

Query: 310 VVSTHGHSDHVGNNNLFLNAKH---IVGFSISFREKYFMHPFDKGEEYKIND-SVKVIPT 477
           ++ TH H DH G N   L+ +H    V  S      Y  HP    +   +    ++ + T
Sbjct: 144 ILCTHKHWDHSGGNR-DLSRRHRDCRVYGSPQDGIPYLTHPLCHQDVVSVGRLQIRALAT 202

Query: 478 PGHTQSDVTVI--ATTRRGEAIAITGDL 555
           PGHTQ  +  +      +G +   +GDL
Sbjct: 203 PGHTQGHLVYLLDGEPYKGPSCLFSGDL 230


>AY358753-1|AAQ89113.1|  361|Homo sapiens AWQG2491 protein.
          Length = 361

 Score = 31.5 bits (68), Expect = 4.2
 Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 6/88 (6%)
 Frame = +1

Query: 310 VVSTHGHSDHVGNNNLFLNAKH---IVGFSISFREKYFMHPFDKGEEYKIND-SVKVIPT 477
           ++ TH H DH G N   L+ +H    V  S      Y  HP    +   +    ++ + T
Sbjct: 144 ILCTHKHWDHSGGNR-DLSRRHRDCRVYGSPQDGIPYLTHPLCHQDVVSVGRLQIRALAT 202

Query: 478 PGHTQSDVTVI--ATTRRGEAIAITGDL 555
           PGHTQ  +  +      +G +   +GDL
Sbjct: 203 PGHTQGHLVYLLDGEPYKGPSCLFSGDL 230


>AB033010-1|BAA86498.1|  380|Homo sapiens KIAA1184 protein protein.
          Length = 380

 Score = 31.5 bits (68), Expect = 4.2
 Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 6/88 (6%)
 Frame = +1

Query: 310 VVSTHGHSDHVGNNNLFLNAKH---IVGFSISFREKYFMHPFDKGEEYKIND-SVKVIPT 477
           ++ TH H DH G N   L+ +H    V  S      Y  HP    +   +    ++ + T
Sbjct: 163 ILCTHKHWDHSGGNR-DLSRRHRDCRVYGSPQDGIPYLTHPLCHQDVVSVGRLQIRALAT 221

Query: 478 PGHTQSDVTVI--ATTRRGEAIAITGDL 555
           PGHTQ  +  +      +G +   +GDL
Sbjct: 222 PGHTQGHLVYLLDGEPYKGPSCLFSGDL 249


>AK126832-1|BAC86713.1|  226|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44884 fis, clone BRAMY2037609. ).
          Length = 226

 Score = 30.7 bits (66), Expect = 7.3
 Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 4/112 (3%)
 Frame = -3

Query: 641 DLFFICC--TGSSLPASNQILGFSI-SSRLSNKSPVIAIASPLLVVAITVTSDCVCPGVG 471
           +++ +C    GS LP  +     +I    LS  SP    AS  L V ++ T+  + PG+ 
Sbjct: 60  EMYLVCLGGRGSFLPGDSFSEHTAILPMALSFTSPPERPASFFLFVCLS-TAIMLLPGLW 118

Query: 470 ITFTLSLILYSSPLSKGCIKYFSLNDIL-NPTICFAFKKRLLFPTWSECPCV 318
           +  T       SP +  C   FSL+    +P +C      L    WSEC C+
Sbjct: 119 LLGT------HSPFNMACSLQFSLSKCSQSPGLCAKGDSALAHRLWSECLCL 164


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,337,533
Number of Sequences: 237096
Number of extensions: 2395926
Number of successful extensions: 8132
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8126
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11326166088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)