Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_F01
         (886 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.8  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   8.6  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   8.6  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   8.6  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          22   8.6  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   8.6  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -1

Query: 664 SLLNLRLSICSSFAVLGLHFQLP 596
           +++ + +SIC +  VL +HF+ P
Sbjct: 314 AMILVSISICVTVVVLNVHFRSP 336


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -1

Query: 664 SLLNLRLSICSSFAVLGLHFQLP 596
           +++ + +SIC +  VL +HF+ P
Sbjct: 314 AMILVSISICVTVVVLNVHFRSP 336


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/48 (22%), Positives = 20/48 (41%)
 Frame = -2

Query: 867 FQIXIPIGRVKNFXSIFRIFISAAVKYQXYHYGLEFFTMNYLELXSFI 724
           F   I +   KN   + RIF+        +   L    MN++++  F+
Sbjct: 498 FTYHIVVNSDKNVKGMVRIFLGPKYDEFGHEVDLVHNYMNFMQMDEFV 545


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 643 SICSSFAVLGLHFQLP 596
           SIC +  VL +HF+ P
Sbjct: 317 SICVTVVVLNVHFRSP 332


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/48 (22%), Positives = 20/48 (41%)
 Frame = -2

Query: 867 FQIXIPIGRVKNFXSIFRIFISAAVKYQXYHYGLEFFTMNYLELXSFI 724
           F   I +   KN   + RIF+        +   L    MN++++  F+
Sbjct: 498 FTYHIVVNSDKNVKGMVRIFLGPKYDEFGHEVDLVHNYMNFMQMDEFV 545


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/48 (22%), Positives = 20/48 (41%)
 Frame = -2

Query: 867 FQIXIPIGRVKNFXSIFRIFISAAVKYQXYHYGLEFFTMNYLELXSFI 724
           F   I +   KN   + RIF+        +   L    MN++++  F+
Sbjct: 124 FTYHIVVNSDKNVKGMVRIFLGPKYDEFGHEVDLVHNYMNFMQMDEFV 171


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 547 GDLFERREDIENPSIWLEAGSEDP 618
           G +FE  +D E PS++     E+P
Sbjct: 55  GTIFEGHDDREQPSVYPLLRFENP 78


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,923
Number of Sequences: 438
Number of extensions: 4509
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)