Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_E24
         (886 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.6  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     24   1.6  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   2.8  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   6.5  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +2

Query: 407 KPVAEELKKLLNKDVTFLTDCIGLEVETACADPSXWFNYPTGESSLP 547
           K + EE++ LL++ +   +D   L+V   C D + +      E+  P
Sbjct: 444 KIIQEEIRTLLDESIQRKSDITELDVSKRCKDLASFMGNLLQETRTP 490


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +2

Query: 407 KPVAEELKKLLNKDVTFLTDCIGLEVETACADPSXWFNYPTGESSLP 547
           K + EE++ LL++ +   +D   L+V   C D + +      E+  P
Sbjct: 150 KIIQEEIRTLLDESIQRKSDITELDVSKRCKDLASFMENLLQETRTP 196


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -1

Query: 676 YQKHH*CRHHQV 641
           YQ HH   HHQV
Sbjct: 70  YQSHHHLHHHQV 81


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = -1

Query: 766 QSIEALSLVRNHWPSAQNLLPPLNCALYVQYQKHH 662
           Q   A  + R +     N+LPP   A ++   +HH
Sbjct: 742 QRERAADMKRRNGALIYNILPPHVAAYFLSRARHH 776


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,131
Number of Sequences: 438
Number of extensions: 4246
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)