Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_E07
(893 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB267886-1|BAF46356.1| 567|Apis mellifera ecdysteroid receptor ... 26 0.53
AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex det... 23 2.8
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 5.0
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 5.0
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 5.0
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 5.0
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 5.0
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 5.0
DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex det... 23 5.0
DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex det... 23 5.0
DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex det... 23 5.0
DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex det... 23 5.0
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 23 5.0
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 5.0
EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein. 22 6.6
>AB267886-1|BAF46356.1| 567|Apis mellifera ecdysteroid receptor A
isoform protein.
Length = 567
Score = 25.8 bits (54), Expect = 0.53
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = +1
Query: 424 MVNPNSVMPSNFAETPVKSVVKEEASNVLLSSVANRDSESKHNPTLASPKEEKSHLTFSP 603
+ N NS + S A + VV L+ A + +HN ASP S+ +SP
Sbjct: 89 LANANSPVGSPSAALQPQHVVYGNPQQQQLA--AETQQQQQHNNGYASPMSTSSYDPYSP 146
Query: 604 NT 609
N+
Sbjct: 147 NS 148
>AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 23.4 bits (48), Expect = 2.8
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 564 QSKRRKKSLNIFSKHNKSL*SSRNRGNKNKK 656
+ +R K+S I S NK++ ++ N N NKK
Sbjct: 305 ERERSKESKIISSLSNKTIHNNNNYKNYNKK 335
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 22.6 bits (46), Expect = 5.0
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +1
Query: 214 SLQDMLDIDIKNEIAT 261
+LQ ++D+D KN+I T
Sbjct: 19 TLQQIIDVDEKNQILT 34
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.6 bits (46), Expect = 5.0
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +1
Query: 214 SLQDMLDIDIKNEIAT 261
+LQ ++D+D KN+I T
Sbjct: 19 TLQQIIDVDEKNQILT 34
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 22.6 bits (46), Expect = 5.0
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +1
Query: 214 SLQDMLDIDIKNEIAT 261
+LQ ++D+D KN+I T
Sbjct: 19 TLQQIIDVDEKNQILT 34
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 22.6 bits (46), Expect = 5.0
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +1
Query: 214 SLQDMLDIDIKNEIAT 261
+LQ ++D+D KN+I T
Sbjct: 19 TLQQIIDVDEKNQILT 34
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 22.6 bits (46), Expect = 5.0
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +1
Query: 214 SLQDMLDIDIKNEIAT 261
+LQ ++D+D KN+I T
Sbjct: 19 TLQQIIDVDEKNQILT 34
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 22.6 bits (46), Expect = 5.0
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +1
Query: 214 SLQDMLDIDIKNEIAT 261
+LQ ++D+D KN+I T
Sbjct: 19 TLQQIIDVDEKNQILT 34
>DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 22.6 bits (46), Expect = 5.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +3
Query: 528 QRFRIETQSNASQSKRRKKSLNIFSKHNKSL*SSRNRGNKNKK 656
+R R T+ S+ + SL+ + HN + + N N NKK
Sbjct: 65 ERSRDRTERERSREPKIISSLSNNTIHNNNYKYNYNNNNYNKK 107
>DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 22.6 bits (46), Expect = 5.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +3
Query: 528 QRFRIETQSNASQSKRRKKSLNIFSKHNKSL*SSRNRGNKNKK 656
+R R T+ S+ + SL+ + HN + + N N NKK
Sbjct: 65 ERSRDRTERERSREPKIISSLSNNTIHNNNYKYNYNNNNYNKK 107
>DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 22.6 bits (46), Expect = 5.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +3
Query: 528 QRFRIETQSNASQSKRRKKSLNIFSKHNKSL*SSRNRGNKNKK 656
+R R T+ S+ + SL+ + HN + + N N NKK
Sbjct: 65 ERSRDRTERERSREPKIISSLSNNTIHNNNYKYNYNNNNYNKK 107
>DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 22.6 bits (46), Expect = 5.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +3
Query: 528 QRFRIETQSNASQSKRRKKSLNIFSKHNKSL*SSRNRGNKNKK 656
+R R T+ S+ + SL+ + HN + + N N NKK
Sbjct: 65 ERSRDRTERERSREPKIISSLSNNTIHNNNYKYNYNNNNYNKK 107
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 5.0
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +1
Query: 214 SLQDMLDIDIKNEIAT 261
+LQ ++D+D KN+I T
Sbjct: 87 TLQQIIDVDEKNQILT 102
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 5.0
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +1
Query: 214 SLQDMLDIDIKNEIAT 261
+LQ ++D+D KN+I T
Sbjct: 87 TLQQIIDVDEKNQILT 102
>EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein.
Length = 570
Score = 22.2 bits (45), Expect = 6.6
Identities = 11/39 (28%), Positives = 16/39 (41%)
Frame = +1
Query: 514 SSVANRDSESKHNPTLASPKEEKSHLTFSPNTIKVSKVH 630
SS+ + E K SP E +S + P T + H
Sbjct: 532 SSMKETEEEKKKTKQSLSPSENQSKMEILPKTTQRQHHH 570
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,883
Number of Sequences: 438
Number of extensions: 4284
Number of successful extensions: 24
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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