Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_D17
         (881 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    27   0.30 
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     22   6.5  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   8.6  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   8.6  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 26.6 bits (56), Expect = 0.30
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +1

Query: 52  RTSKQTLTPSNXVSEVVTKPTNNNDPVKTGYDEITIANFLQSLRAQKTE 198
           + S Q+LT +  VS + T  T+NN  ++     +     ++SLR +  E
Sbjct: 711 KESTQSLTTTGNVSYLTTNNTSNNSQLQIPRASLVSTTSVKSLRLEGDE 759


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 448 RTI*FVVHIMLALYIFFVGLFK 383
           +T+ FV+ IML    FFV   K
Sbjct: 225 KTVCFVIPIMLLFLAFFVSFRK 246


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 4/11 (36%), Positives = 9/11 (81%)
 Frame = -2

Query: 253 WYHCPYLFSSV 221
           W+HCP ++ ++
Sbjct: 473 WHHCPEIYKAI 483


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 380 EFEQTNEEDIESEHNMNDESDRSDD 454
           E+EQ +EED++   N   E +   D
Sbjct: 348 EYEQPSEEDLKRITNQPSEGEDISD 372


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,227
Number of Sequences: 438
Number of extensions: 3859
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)