Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_D16
         (869 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              91   1e-20
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    25   1.2  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    24   1.6  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   3.7  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          23   4.8  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   6.4  

>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 91.1 bits (216), Expect = 1e-20
 Identities = 35/57 (61%), Positives = 42/57 (73%)
 Frame = +1

Query: 511 ECAFCKKNGESVSWYRTHALKDGRGRVKCPVLRGFRCPRCGATGDRAHTIKYCPQNS 681
           EC FC+ NGE  ++YR H LKD  GRV CPVLR + CP CGA GD AHT+KYCP+ +
Sbjct: 39  ECVFCRNNGEEEAYYRKHLLKDADGRVSCPVLRAYTCPICGACGDIAHTVKYCPKGT 95


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 394 FLKSTRTASAGNSLPCEET 338
           FL STRTA  G    C+E+
Sbjct: 239 FLSSTRTAETGTIRKCDES 257


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +1

Query: 499 QRHFECAFCKKNGESVSWYRTHALKDGRGRVKCPVLRGFRCPRCGAT 639
           ++ ++C  C+K  +  + Y++H    G+   + P    +RC  CG T
Sbjct: 59  EKTYQCLLCQKAFDQKNLYQSHLRSHGK-EGEDP----YRCNICGKT 100


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -3

Query: 687 LIGVLWAIFNGVSSVPGGPTAR 622
           L+G++W +   +S   G P A+
Sbjct: 5   LVGIMWIVLVLISGCSGNPDAK 26


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 239 FFQNASTFQKLWLFFNICRRRWYN 168
           F +   T  + W+  NI R+RW++
Sbjct: 24  FLKRPITGDEKWVVNNIKRKRWWS 47


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 514 CAFCKKNGESVSWYRTHALKDGRGRVK 594
           C   +KNGE+    + HA+K    +VK
Sbjct: 163 CEKYEKNGETYLRIKKHAVKFNPAKVK 189


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,393
Number of Sequences: 438
Number of extensions: 4862
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)