Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_D11
         (885 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    24   2.1  
AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein ...    23   2.8  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   3.7  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   6.5  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   8.6  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   8.6  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   8.6  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 760 WAVCTNPPFSPTAAP 804
           W V  +PP+SP  AP
Sbjct: 264 WDVLPHPPYSPDLAP 278


>AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein
           protein.
          Length = 87

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -1

Query: 534 GGGAYGKTPANAAFLRFLAF 475
           G   YG  P N AF RF  +
Sbjct: 68  GASGYGFVPPNQAFYRFFYY 87


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 598 DTRRFPLEAPSCALLFRPCR 657
           + R FP++  SC L+   C+
Sbjct: 165 ELRNFPMDRQSCPLILGSCK 184


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -2

Query: 704 KRHASRREKGGQVSGKRQGRNRRAH 630
           KR  +++ +G + +     +NRRAH
Sbjct: 39  KRPKTKKSQGSRTTHNELEKNRRAH 63


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 752 LQAGLCARTPRSARPLRLIRYYRLS 826
           L AG   R  R A+ L L+R  RLS
Sbjct: 199 LHAGRALRILRLAKLLSLVRLLRLS 223


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 752 LQAGLCARTPRSARPLRLIRYYRLS 826
           L AG   R  R A+ L L+R  RLS
Sbjct: 199 LHAGRALRILRLAKLLSLVRLLRLS 223


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 752 LQAGLCARTPRSARPLRLIRYYRLS 826
           L AG   R  R A+ L L+R  RLS
Sbjct: 199 LHAGRALRILRLAKLLSLVRLLRLS 223


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,167
Number of Sequences: 438
Number of extensions: 5874
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)