Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_D09
         (854 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.052
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    32   0.12 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   2.6  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.1 bits (72), Expect = 0.052
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +3

Query: 546 PPPPPXLXXXXPPPPPXP 599
           PPPPP +    PPPPP P
Sbjct: 764 PPPPPGVAGAGPPPPPPP 781



 Score = 32.3 bits (70), Expect = 0.090
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +1

Query: 547 PPPXPXFXXXXPPPPPPP 600
           PPP P      PPPPPPP
Sbjct: 764 PPPPPGVAGAGPPPPPPP 781



 Score = 29.9 bits (64), Expect = 0.48
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +3

Query: 546 PPPPPXLXXXXPPPPPXPXG 605
           P PPP      PPPPP P G
Sbjct: 750 PVPPPAPIMGGPPPPPPPPG 769



 Score = 28.7 bits (61), Expect = 1.1
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +3

Query: 546 PPPPPXLXXXXPPPPPXP 599
           PPPP       PPPPP P
Sbjct: 765 PPPPGVAGAGPPPPPPPP 782



 Score = 28.3 bits (60), Expect = 1.5
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +1

Query: 547 PPPXPXFXXXXPPPPPPP 600
           PPP        PPPPPPP
Sbjct: 765 PPPPGVAGAGPPPPPPPP 782



 Score = 27.9 bits (59), Expect = 1.9
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +1

Query: 547 PPPXPXFXXXXPPPPPPP 600
           PPP P       PPPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPP 780



 Score = 27.9 bits (59), Expect = 1.9
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +1

Query: 547 PPPXPXFXXXXPPPPPPP 600
           PPP        PPPPPPP
Sbjct: 766 PPPGVAGAGPPPPPPPPP 783



 Score = 27.5 bits (58), Expect = 2.6
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +3

Query: 546 PPPPPXLXXXXPPPPPXP 599
           PPPPP       PPPP P
Sbjct: 763 PPPPPPGVAGAGPPPPPP 780



 Score = 26.6 bits (56), Expect = 4.5
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 546 PPPPPXLXXXXPPPPPXP 599
           PPPPP +    P P P P
Sbjct: 733 PPPPPAVIVPTPAPAPIP 750



 Score = 25.8 bits (54), Expect = 7.8
 Identities = 13/38 (34%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
 Frame = +3

Query: 546 PPPPPXLXXXXPPPP-PXPXGXFXPXXXXXXXXXGXGG 656
           PPP P +    PPPP P   G   P           GG
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +1

Query: 547 PPPXPXFXXXXPPPPPPP 600
           PPP P F     PPPPPP
Sbjct: 12  PPPPPGFEPPSQPPPPPP 29



 Score = 31.5 bits (68), Expect = 0.16
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +3

Query: 546 PPPPPXLXXXXPPPPPXPXG 605
           PPPPP       PPPP P G
Sbjct: 12  PPPPPGFEPPSQPPPPPPPG 31



 Score = 27.1 bits (57), Expect = 3.4
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +1

Query: 580 PPPPPPPGXFXXP 618
           PPPPPPP  F  P
Sbjct: 9   PPPPPPPPGFEPP 21


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +3

Query: 546  PPPPPXLXXXXPPPPPXPXG 605
            PPPPP      P  PP P G
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAG 1726


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,684,475
Number of Sequences: 5004
Number of extensions: 21672
Number of successful extensions: 220
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)