Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_D04
         (966 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   4.1  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   5.5  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    22   7.2  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   9.6  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    22   9.6  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   9.6  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 254 HPGRHVPRAHAPHPGQS 304
           HP +H P  + PH G S
Sbjct: 317 HPHQHHPSQYHPHRGSS 333


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 5.5
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 235 DTCACTPSRAACTQGACSASR 297
           +TC C+PS  + T+   S+ R
Sbjct: 329 ETCRCSPSNPSITRTGLSSVR 349


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = -3

Query: 520 GSHSTSASKVSPLACSGIPPAVSSAPQLMLLRWF 419
           G++ TS       +C  +PP +  +   M + WF
Sbjct: 85  GTYQTSVVVTHDGSCLYVPPGIFKSTCKMDIAWF 118


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 9.6
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 249 HPIPGGMYPGRMLR 290
           HPIP G YP    R
Sbjct: 288 HPIPTGYYPTMRFR 301


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 9.6
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = -3

Query: 520 GSHSTSASKVSPLACSGIPPAVSSAPQLMLLRWF 419
           G++ TS       +C  +PP +  +   M + WF
Sbjct: 85  GTYQTSVVVTHDGSCLYVPPGIFKSTCKMDVAWF 118


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 9.6
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 249 HPIPGGMYPGRMLR 290
           HPIP G YP    R
Sbjct: 288 HPIPTGYYPTMRFR 301


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,058
Number of Sequences: 438
Number of extensions: 4436
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31806957
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)