Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_D02
         (921 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   1.6  
SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr 3...    28   2.1  
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    27   4.9  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    26   8.6  

>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 433

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/62 (22%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
 Frame = +2

Query: 470 KQSLEDAMKETSMWMSQR------HNLQSKKQLLKYYSQTINSLNTLDNVLQNITEQKMY 631
           K+++EDA +E    +  R      H  + + +L +YY + +      +NV++ I  ++  
Sbjct: 48  KKAIEDARQEVLQQIQHRKFRQYLHEREQEARLQEYYLEQLQERRAFENVVRTIIRKRFE 107

Query: 632 DK 637
           D+
Sbjct: 108 DE 109


>SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 466

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = +2

Query: 719 EHKTQFTYIEETLV--RTLNELLFQFWNDGD 805
           +HKTQF Y++++LV    + + +F  W + D
Sbjct: 269 DHKTQFFYVDQSLVFWSCMMDQMFLLWLESD 299


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1024

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 458  VLNVKQSLEDAMKETSMWMSQRHNLQSKKQLLK 556
            +L    SLE+++ E   W S R  +++ + LLK
Sbjct: 986  LLEAPTSLENSLVEDDKWASLRQKIKAARDLLK 1018


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 6/118 (5%)
 Frame = +2

Query: 461 LNVKQSLEDAMKETSMWMSQRHNLQSKKQLLKYYSQTINSLNTLDNVLQNITEQKMYDKI 640
           LNVK S     +E   ++S + N + KK++     Q +NS   L++V      +K+ +++
Sbjct: 493 LNVKSS-----REQLQYVS-KSNQEHKKEVEALQLQLVNSSTELESVKSE--NEKLKNEL 544

Query: 641 VLADRAAMQY--NQLKFTIKKCD-NLVKLEHKTQFTYIEETLVRT---LNELLFQFWN 796
           VL      +Y  N+ K T    D +    E K     + E L RT     E    FWN
Sbjct: 545 VLEIEKRKKYETNEAKITTVATDLSQYYRESKEYIASLYEKLDRTERNNKENENNFWN 602


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,429,247
Number of Sequences: 5004
Number of extensions: 41923
Number of successful extensions: 124
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)