Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_D02
         (921 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   1.7  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   6.8  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   9.0  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +2

Query: 536 SKKQLLKYYSQTINSLN-TLDNVLQNITEQKMYDKIVLADRAAMQYNQLKFTIKKCDNLV 712
           S  +  KY+ QT+N LN  L+ V + +T    Y   ++     M  N +K  +  C +L+
Sbjct: 41  SNNKSKKYFEQTLNELNFNLNYVNKGVT----YKHTII----EMDSNPIKTALSVCKSLI 92

Query: 713 K 715
           +
Sbjct: 93  E 93


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 13/59 (22%), Positives = 24/59 (40%)
 Frame = +2

Query: 455 DVLNVKQSLEDAMKETSMWMSQRHNLQSKKQLLKYYSQTINSLNTLDNVLQNITEQKMY 631
           D+ NVK +L+       +  +   N+   K  +  Y     S+N     ++N    +MY
Sbjct: 396 DLYNVKNTLDSYNGSMEINQNIAQNIDHAKNTIIDYRNNDLSINEEKRTIENEQLNRMY 454


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +2

Query: 746 EETLVRTLNELLFQFWNDGD 805
           EETL++  + L   F+N+GD
Sbjct: 226 EETLIKISDVLEETFYNNGD 245


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,539
Number of Sequences: 438
Number of extensions: 2812
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29992872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)