Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_D01
(881 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC002959-1|AAH02959.1| 518|Homo sapiens APEX nuclease (apurinic... 32 2.4
AY884244-1|AAW56941.1| 518|Homo sapiens APEX nuclease (apurinic... 32 2.4
AL020991-3|CAI43126.1| 518|Homo sapiens APEX nuclease (apurinic... 32 2.4
AJ011311-1|CAB45242.1| 518|Homo sapiens AP endonuclease XTH2, p... 32 2.4
AF119046-1|AAD43041.1| 518|Homo sapiens APE2 protein protein. 32 2.4
AB049211-1|BAB13764.1| 518|Homo sapiens apurinic/apyrimidinic e... 32 2.4
AB021260-1|BAA78422.1| 518|Homo sapiens APEX nuclease-like 2 pr... 32 2.4
AY823162-1|AAX24102.1| 1196|Homo sapiens cation-transporting P5-... 31 4.2
AY358110-1|AAQ88477.1| 212|Homo sapiens HIAG3052 protein. 31 4.2
AB033063-1|BAA86551.2| 1268|Homo sapiens KIAA1237 protein protein. 30 9.7
>BC002959-1|AAH02959.1| 518|Homo sapiens APEX nuclease
(apurinic/apyrimidinic endonuclease) 2 protein.
Length = 518
Score = 32.3 bits (70), Expect = 2.4
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 234 GLMSEFTKSEWKKV-SEGGAMETCHKLYTWVNHTVLMLLFQIF 359
G M EFT+ E + + SEG A+ T HK+ TW + L ++
Sbjct: 114 GNMDEFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVY 156
>AY884244-1|AAW56941.1| 518|Homo sapiens APEX nuclease
(apurinic/apyrimidinic endonuclease) 2 protein.
Length = 518
Score = 32.3 bits (70), Expect = 2.4
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 234 GLMSEFTKSEWKKV-SEGGAMETCHKLYTWVNHTVLMLLFQIF 359
G M EFT+ E + + SEG A+ T HK+ TW + L ++
Sbjct: 114 GNMDEFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVY 156
>AL020991-3|CAI43126.1| 518|Homo sapiens APEX nuclease
(apurinic/apyrimidinic endonuclease) 2 protein.
Length = 518
Score = 32.3 bits (70), Expect = 2.4
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 234 GLMSEFTKSEWKKV-SEGGAMETCHKLYTWVNHTVLMLLFQIF 359
G M EFT+ E + + SEG A+ T HK+ TW + L ++
Sbjct: 114 GNMDEFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVY 156
>AJ011311-1|CAB45242.1| 518|Homo sapiens AP endonuclease XTH2,
putative protein.
Length = 518
Score = 32.3 bits (70), Expect = 2.4
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 234 GLMSEFTKSEWKKV-SEGGAMETCHKLYTWVNHTVLMLLFQIF 359
G M EFT+ E + + SEG A+ T HK+ TW + L ++
Sbjct: 114 GNMDEFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVY 156
>AF119046-1|AAD43041.1| 518|Homo sapiens APE2 protein protein.
Length = 518
Score = 32.3 bits (70), Expect = 2.4
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 234 GLMSEFTKSEWKKV-SEGGAMETCHKLYTWVNHTVLMLLFQIF 359
G M EFT+ E + + SEG A+ T HK+ TW + L ++
Sbjct: 114 GNMDEFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVY 156
>AB049211-1|BAB13764.1| 518|Homo sapiens apurinic/apyrimidinic
endonuclease 2 protein.
Length = 518
Score = 32.3 bits (70), Expect = 2.4
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 234 GLMSEFTKSEWKKV-SEGGAMETCHKLYTWVNHTVLMLLFQIF 359
G M EFT+ E + + SEG A+ T HK+ TW + L ++
Sbjct: 114 GNMDEFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVY 156
>AB021260-1|BAA78422.1| 518|Homo sapiens APEX nuclease-like 2
protein protein.
Length = 518
Score = 32.3 bits (70), Expect = 2.4
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 234 GLMSEFTKSEWKKV-SEGGAMETCHKLYTWVNHTVLMLLFQIF 359
G M EFT+ E + + SEG A+ T HK+ TW + L ++
Sbjct: 114 GNMDEFTQEELRALDSEGRALLTQHKIRTWEGKEKTLTLINVY 156
>AY823162-1|AAX24102.1| 1196|Homo sapiens cation-transporting
P5-ATPase protein.
Length = 1196
Score = 31.5 bits (68), Expect = 4.2
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -1
Query: 536 LRER*DSLCGVLFWTSDIDLMCLLNFI-SFVSGENVKLKLVLWLLYR 399
L R D LC + W + I +M LNFI S V+ E V LW++ +
Sbjct: 1094 LYRRLDLLCTPVLWRASIVIMLSLNFIVSLVAEEAVIENRALWMMIK 1140
>AY358110-1|AAQ88477.1| 212|Homo sapiens HIAG3052 protein.
Length = 212
Score = 31.5 bits (68), Expect = 4.2
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -1
Query: 536 LRER*DSLCGVLFWTSDIDLMCLLNFI-SFVSGENVKLKLVLWLLYR 399
L R D LC + W + I +M LNFI S V+ E V LW++ +
Sbjct: 110 LYRRLDLLCTPVLWRASIVIMLSLNFIVSLVAEEAVIENRALWMMIK 156
>AB033063-1|BAA86551.2| 1268|Homo sapiens KIAA1237 protein protein.
Length = 1268
Score = 30.3 bits (65), Expect = 9.7
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Frame = +1
Query: 478 RSMSDVQNSTPHRLSYRSRRGSNHILLTYDSDXXXXXXASRFLLTDSSDSSDYCESPKK- 654
RS++ + + R S+H TY S + +TD+S SSD ES
Sbjct: 415 RSIAGISYGQVRGTAIEQRTSSDHTDHTYLSSTFTKGERALLSITDNSSSSDIVESSTSY 474
Query: 655 IDLLRSEH--YKAFGFHENT 708
I + S H Y +F FH T
Sbjct: 475 IKISNSSHSEYSSF-FHAQT 493
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,689,174
Number of Sequences: 237096
Number of extensions: 2579933
Number of successful extensions: 5136
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5134
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11270645666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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