Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_C24
         (918 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.96 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   6.8  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.0 bits (52), Expect = 0.96
 Identities = 11/34 (32%), Positives = 12/34 (35%)
 Frame = +3

Query: 708 PPRXPXXXPPXXXXTXXPXPXRPPPXXXXPGXPP 809
           P   P   P        P P + PP    PG PP
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 24.6 bits (51), Expect = 1.3
 Identities = 12/41 (29%), Positives = 12/41 (29%)
 Frame = +3

Query: 615 PXXPXPPXXXXPKPXPPXXXXGPXPXXXXXPPPRXPXXXPP 737
           P    P     P   P     G  P     PPP  P   PP
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 23.0 bits (47), Expect = 3.9
 Identities = 12/38 (31%), Positives = 13/38 (34%)
 Frame = +2

Query: 662 PXXXXRPXXPLXXXPPXPXPXXXPPPPXXXXXPPXRXP 775
           P     P  P    PP P     PPP      PP + P
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQG--PPPGGPPGAPPSQNP 60


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3

Query: 591 GXSXXPPXPXXPXPP 635
           G S  PP P  P PP
Sbjct: 333 GDSDTPPKPAPPPPP 347


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,736
Number of Sequences: 438
Number of extensions: 4129
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29871933
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)