Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_C23
         (908 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   3.8  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   8.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   8.9  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 615 NPNNKDTLGNTPLHLAACTNHITVVIELLDAGTDVSPEE 731
           NP  KD L +   H+A   +   ++ +L    T+V+P +
Sbjct: 93  NPRGKDALWSLVPHMAWQLSTAHLLAQLFLKSTEVTPRD 131



 Score = 22.6 bits (46), Expect = 5.1
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +3

Query: 189 SLXNCIMTDSGVDTGNXSSDNPVFDHSKCVLEFNL 293
           ++ +  M  SG+     S D P + H   ++EF L
Sbjct: 841 TIGSTYMAASGITESAESEDGPRWGHLSTLVEFAL 875


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 418 YLCLRRQCLAFVEHLIFPT 362
           Y+ +RR+ L +  +LI PT
Sbjct: 226 YIIIRRKTLFYTVNLILPT 244


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 10/42 (23%), Positives = 17/42 (40%)
 Frame = +3

Query: 618 PNNKDTLGNTPLHLAACTNHITVVIELLDAGTDVSPEECXST 743
           P N + +G+ PLH  A +  +   I      T  +     +T
Sbjct: 83  PGNLEQIGSRPLHPPASSTSLPATITTTTTTTTTTTATAAAT 124


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,848
Number of Sequences: 438
Number of extensions: 3752
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29509116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)