Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_C22
         (849 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.6  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   3.6  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   3.6  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   6.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.2  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +1

Query: 82  PPAPSGPDSSK 114
           PP+ SGPDS+K
Sbjct: 347 PPSSSGPDSAK 357


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 420 IVSSIAFDNKDISDNYLSKLSSNKLAV 340
           +VS   FD K +SD  + KLS +  +V
Sbjct: 209 VVSDPIFDKKAMSDLVICKLSHSNASV 235


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 420 IVSSIAFDNKDISDNYLSKLSSNKLAV 340
           +VS   FD K +SD  + KLS +  +V
Sbjct: 209 VVSDPIFDKKAMSDLVICKLSHSNASV 235


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 163 NVLECLLIVVAFXVDLVPSFFIVLLYVCECIV 258
           NVL  L +V    +  V ++FIV L V + +V
Sbjct: 204 NVLVILAVVRERALQTVTNYFIVSLAVADLLV 235


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = -2

Query: 272  HPFKITIHSHTYNNTIKNEGTRSTLKATTISK 177
            HP    +HS  Y+     EG  S   A T  K
Sbjct: 1731 HPNNTLLHSFMYHEHAMTEGCASPPPAATSMK 1762


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = -2

Query: 272  HPFKITIHSHTYNNTIKNEGTRSTLKATTISK 177
            HP    +HS  Y+     EG  S   A T  K
Sbjct: 1727 HPNNTLLHSFMYHEHAMTEGCASPPPAATSMK 1758


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,052
Number of Sequences: 438
Number of extensions: 2719
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)