Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_C19
(883 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M60854-1|AAA60583.1| 146|Homo sapiens RPS16 protein. 259 8e-69
BC007977-1|AAH07977.1| 146|Homo sapiens ribosomal protein S16 p... 259 8e-69
BC004324-1|AAH04324.1| 146|Homo sapiens ribosomal protein S16 p... 259 8e-69
AB061841-1|BAB79479.1| 146|Homo sapiens ribosomal protein S16 p... 259 8e-69
BC071674-1|AAH71674.1| 152|Homo sapiens RPS16 protein protein. 137 6e-32
AK097937-1|BAC85106.1| 178|Homo sapiens protein ( Homo sapiens ... 111 4e-24
BC057240-1|AAH57240.1| 396|Homo sapiens mitochondrial ribosomal... 53 2e-06
BC047784-1|AAH47784.1| 302|Homo sapiens MRPS9 protein protein. 53 2e-06
Y08982-1|CAA70171.1| 1530|Homo sapiens synaptonemal complex late... 31 5.5
BC146798-1|AAI46799.1| 792|Homo sapiens Unknown (protein for IM... 31 5.5
BC132870-1|AAI32871.1| 1530|Homo sapiens synaptonemal complex pr... 31 5.5
BC132864-1|AAI32865.1| 1530|Homo sapiens synaptonemal complex pr... 31 5.5
BC093771-1|AAH93771.1| 1127|Homo sapiens NCK-associated protein ... 31 5.5
BC093769-1|AAH93769.1| 1127|Homo sapiens NCK-associated protein ... 31 5.5
BC040566-1|AAH40566.1| 1024|Homo sapiens SYCP2 protein protein. 31 5.5
AL158092-3|CAM28338.1| 1023|Homo sapiens synaptonemal complex pr... 31 5.5
AL158092-2|CAC36022.2| 1530|Homo sapiens synaptonemal complex pr... 31 5.5
AL109928-10|CAM28269.1| 1023|Homo sapiens synaptonemal complex p... 31 5.5
AL109928-9|CAI21795.1| 1530|Homo sapiens synaptonemal complex pr... 31 5.5
AL080226-1|CAB45780.1| 520|Homo sapiens hypothetical protein pr... 31 5.5
>M60854-1|AAA60583.1| 146|Homo sapiens RPS16 protein.
Length = 146
Score = 259 bits (635), Expect = 8e-69
Identities = 117/144 (81%), Positives = 138/144 (95%)
Frame = +2
Query: 92 SRXPIQAVQVFGRKQTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEK 271
S+ P+Q+VQVFGRK+TATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+
Sbjct: 3 SKGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKER 62
Query: 272 FSMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVA 451
F+ VDIRV VKGGGHVAQ+YAIRQ+ISKAL+A+YQKYVDEASKKEIKDIL+QYDR+LLVA
Sbjct: 63 FAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVA 122
Query: 452 DPRRCEPKKFGGPGARARYQKSYR 523
DPRRCE KKFGGPGARARYQKSYR
Sbjct: 123 DPRRCESKKFGGPGARARYQKSYR 146
>BC007977-1|AAH07977.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 259 bits (635), Expect = 8e-69
Identities = 117/144 (81%), Positives = 138/144 (95%)
Frame = +2
Query: 92 SRXPIQAVQVFGRKQTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEK 271
S+ P+Q+VQVFGRK+TATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+
Sbjct: 3 SKGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKER 62
Query: 272 FSMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVA 451
F+ VDIRV VKGGGHVAQ+YAIRQ+ISKAL+A+YQKYVDEASKKEIKDIL+QYDR+LLVA
Sbjct: 63 FAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVA 122
Query: 452 DPRRCEPKKFGGPGARARYQKSYR 523
DPRRCE KKFGGPGARARYQKSYR
Sbjct: 123 DPRRCESKKFGGPGARARYQKSYR 146
>BC004324-1|AAH04324.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 259 bits (635), Expect = 8e-69
Identities = 117/144 (81%), Positives = 138/144 (95%)
Frame = +2
Query: 92 SRXPIQAVQVFGRKQTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEK 271
S+ P+Q+VQVFGRK+TATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+
Sbjct: 3 SKGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKER 62
Query: 272 FSMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVA 451
F+ VDIRV VKGGGHVAQ+YAIRQ+ISKAL+A+YQKYVDEASKKEIKDIL+QYDR+LLVA
Sbjct: 63 FAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVA 122
Query: 452 DPRRCEPKKFGGPGARARYQKSYR 523
DPRRCE KKFGGPGARARYQKSYR
Sbjct: 123 DPRRCESKKFGGPGARARYQKSYR 146
>AB061841-1|BAB79479.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 259 bits (635), Expect = 8e-69
Identities = 117/144 (81%), Positives = 138/144 (95%)
Frame = +2
Query: 92 SRXPIQAVQVFGRKQTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEK 271
S+ P+Q+VQVFGRK+TATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+
Sbjct: 3 SKGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKER 62
Query: 272 FSMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVA 451
F+ VDIRV VKGGGHVAQ+YAIRQ+ISKAL+A+YQKYVDEASKKEIKDIL+QYDR+LLVA
Sbjct: 63 FAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVA 122
Query: 452 DPRRCEPKKFGGPGARARYQKSYR 523
DPRRCE KKFGGPGARARYQKSYR
Sbjct: 123 DPRRCESKKFGGPGARARYQKSYR 146
>BC071674-1|AAH71674.1| 152|Homo sapiens RPS16 protein protein.
Length = 152
Score = 137 bits (331), Expect = 6e-32
Identities = 60/86 (69%), Positives = 77/86 (89%)
Frame = +2
Query: 92 SRXPIQAVQVFGRKQTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEK 271
S+ P+Q+VQVFGRK+TATAVA+CKRG+G+++VNGRPL+++EPR LQYKL EP+LLLGKE+
Sbjct: 3 SKGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKER 62
Query: 272 FSMVDIRVTVKGGGHVAQVYAIRQAI 349
F+ VDIRV VKGGGHVAQ+Y Q +
Sbjct: 63 FAGVDIRVRVKGGGHVAQIYGESQEL 88
Score = 30.7 bits (66), Expect = 7.3
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +3
Query: 366 PSTRNM*TKPQRRKSKTS*YNTIGVCW 446
P TRNM + RR+SKTS + G CW
Sbjct: 126 PITRNMWMRLPRRRSKTSSSSMTGPCW 152
>AK097937-1|BAC85106.1| 178|Homo sapiens protein ( Homo sapiens
cDNA FLJ40618 fis, clone THYMU2013089, moderately
similar to 40S RIBOSOMAL PROTEIN S16. ).
Length = 178
Score = 111 bits (266), Expect = 4e-24
Identities = 57/108 (52%), Positives = 75/108 (69%)
Frame = +2
Query: 104 IQAVQVFGRKQTATAVAYCKRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMV 283
+Q+VQ+F K+ A AV C+ G G +R+N PL+++ LQYKL E LLL KE+ + +
Sbjct: 18 LQSVQIFTYKEMAIAVVLCRCGSGFIRMNEGPLEMIRLLTLQYKLLELGLLLDKEQLAGM 77
Query: 284 DIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQ 427
DI V VKG GHV Q+YA+ Q ISKAL+ Y KYVDEAS +EIKD L +
Sbjct: 78 DIHVRVKGSGHVVQIYAVLQYISKALVPCYPKYVDEAS-EEIKDTLTR 124
>BC057240-1|AAH57240.1| 396|Homo sapiens mitochondrial ribosomal
protein S9 protein.
Length = 396
Score = 52.8 bits (121), Expect = 2e-06
Identities = 45/129 (34%), Positives = 61/129 (47%), Gaps = 1/129 (0%)
Frame = +2
Query: 125 GRKQTATAVAYC-KRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTV 301
G+++TA A A K G G ++VNG L P + Q + Q ++ D+ TV
Sbjct: 274 GKRKTAKAEAIVYKHGSGRIKVNGIDYQLYFP-ITQDREQLMFPFHFVDRLGKHDVTCTV 332
Query: 302 KGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKF 481
GGG AQ AIR A++KAL +F + DE LL DPR E KK
Sbjct: 333 SGGGRSAQAGAIRLAMAKALCSFVTE--DEVEWMR--------QAGLLTTDPRVRERKKP 382
Query: 482 GGPGARARY 508
G GAR ++
Sbjct: 383 GQEGARRKF 391
>BC047784-1|AAH47784.1| 302|Homo sapiens MRPS9 protein protein.
Length = 302
Score = 52.8 bits (121), Expect = 2e-06
Identities = 45/129 (34%), Positives = 61/129 (47%), Gaps = 1/129 (0%)
Frame = +2
Query: 125 GRKQTATAVAYC-KRGHGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSMVDIRVTV 301
G+++TA A A K G G ++VNG L P + Q + Q ++ D+ TV
Sbjct: 180 GKRKTAKAEAIVYKHGSGRIKVNGIDYQLYFP-ITQDREQLMFPFHFVDRLGKHDVTCTV 238
Query: 302 KGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKF 481
GGG AQ AIR A++KAL +F + DE LL DPR E KK
Sbjct: 239 SGGGRSAQAGAIRLAMAKALCSFVTE--DEVEWMR--------QAGLLTTDPRVRERKKP 288
Query: 482 GGPGARARY 508
G GAR ++
Sbjct: 289 GQEGARRKF 297
>Y08982-1|CAA70171.1| 1530|Homo sapiens synaptonemal complex lateral
element protein protein.
Length = 1530
Score = 31.1 bits (67), Expect = 5.5
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +2
Query: 323 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 454
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>BC146798-1|AAI46799.1| 792|Homo sapiens Unknown (protein for
IMAGE:8860302) protein.
Length = 792
Score = 31.1 bits (67), Expect = 5.5
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +2
Query: 323 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 454
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 338 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 381
>BC132870-1|AAI32871.1| 1530|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1530
Score = 31.1 bits (67), Expect = 5.5
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +2
Query: 323 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 454
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>BC132864-1|AAI32865.1| 1530|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1530
Score = 31.1 bits (67), Expect = 5.5
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +2
Query: 323 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 454
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>BC093771-1|AAH93771.1| 1127|Homo sapiens NCK-associated protein
1-like protein.
Length = 1127
Score = 31.1 bits (67), Expect = 5.5
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = +2
Query: 212 EPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVD 388
+P L K EP L +KF +D+R + + H+ V+ + I + L +YQ +VD
Sbjct: 42 KPPFLLEKSMEPSLKYINKKFPNIDVRNSTQ---HLGPVHREKAEIIRFLTNYYQSFVD 97
>BC093769-1|AAH93769.1| 1127|Homo sapiens NCK-associated protein
1-like protein.
Length = 1127
Score = 31.1 bits (67), Expect = 5.5
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = +2
Query: 212 EPRLLQYKLQEPILLLGKEKFSMVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVD 388
+P L K EP L +KF +D+R + + H+ V+ + I + L +YQ +VD
Sbjct: 42 KPPFLLEKSMEPSLKYINKKFPNIDVRNSTQ---HLGPVHREKAEIIRFLTNYYQSFVD 97
>BC040566-1|AAH40566.1| 1024|Homo sapiens SYCP2 protein protein.
Length = 1024
Score = 31.1 bits (67), Expect = 5.5
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +2
Query: 323 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 454
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>AL158092-3|CAM28338.1| 1023|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1023
Score = 31.1 bits (67), Expect = 5.5
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +2
Query: 323 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 454
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>AL158092-2|CAC36022.2| 1530|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1530
Score = 31.1 bits (67), Expect = 5.5
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +2
Query: 323 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 454
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>AL109928-10|CAM28269.1| 1023|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1023
Score = 31.1 bits (67), Expect = 5.5
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +2
Query: 323 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 454
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>AL109928-9|CAI21795.1| 1530|Homo sapiens synaptonemal complex
protein 2 protein.
Length = 1530
Score = 31.1 bits (67), Expect = 5.5
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +2
Query: 323 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 454
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 339 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 382
>AL080226-1|CAB45780.1| 520|Homo sapiens hypothetical protein
protein.
Length = 520
Score = 31.1 bits (67), Expect = 5.5
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +2
Query: 323 QVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVAD 454
Q+Y+I SK L+ K + SK+E K++L+ +D SL + +
Sbjct: 61 QIYSIEVRESKKLLTIILKNTVKISKREGKELLLYFDASLEITN 104
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,233,620
Number of Sequences: 237096
Number of extensions: 2313556
Number of successful extensions: 4999
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 4870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4995
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11270645666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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