Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_C13
         (915 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF386649-1|AAL26987.1| 1362|Homo sapiens bromodomain-containing ...    31   5.8  
AF065164-1|AAC28444.2|  889|Homo sapiens hyperpolarization-activ...    31   5.8  
AY260762-1|AAP20225.1| 3567|Homo sapiens zinc finger homeodomain...    31   7.7  
AB209373-1|BAD92610.1|  410|Homo sapiens CS0DA006YC23 variant pr...    31   7.7  

>AF386649-1|AAL26987.1| 1362|Homo sapiens bromodomain-containing 4
           protein.
          Length = 1362

 Score = 31.1 bits (67), Expect = 5.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 716 PPXPPPPXKKKXXPPXAPP 660
           PP PPPP +++  PP  PP
Sbjct: 764 PPPPPPPQQQQQPPPPPPP 782


>AF065164-1|AAC28444.2|  889|Homo sapiens
           hyperpolarization-activated, cyclic nucleotide-gated
           channel 2 protein.
          Length = 889

 Score = 31.1 bits (67), Expect = 5.8
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -2

Query: 716 PPXPPPPXKKKXXPPXAPP 660
           PP PPPP   K  PP  PP
Sbjct: 22  PPPPPPPRPPKQQPPPPPP 40


>AY260762-1|AAP20225.1| 3567|Homo sapiens zinc finger homeodomain 4
            protein protein.
          Length = 3567

 Score = 30.7 bits (66), Expect = 7.7
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -2

Query: 716  PPXPPPPXKKKXXPPXAPP 660
            PP PPPP      PP APP
Sbjct: 2002 PPPPPPPPPPPPPPPSAPP 2020


>AB209373-1|BAD92610.1|  410|Homo sapiens CS0DA006YC23 variant
           protein.
          Length = 410

 Score = 30.7 bits (66), Expect = 7.7
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = -1

Query: 717 PPXSPPPXKKKXXPPXXPPXXFFXXPLFFFXXFFXPPXPRV 595
           PP  PPP      P   PP   +  P   +   F PP PR+
Sbjct: 314 PPPVPPPPASFPPPAIPPPTPGYPPPPPTYNPNFPPPPPRL 354


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,062,998
Number of Sequences: 237096
Number of extensions: 826499
Number of successful extensions: 13629
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9735
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11881370308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)