Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_C05
         (894 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             26   0.40 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.8  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   6.6  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   8.7  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 26.2 bits (55), Expect = 0.40
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +3

Query: 618  PGRASQKSTLKSEVAKPDRTIX-IPGVSPWKAPSXRSPVPTLPLTGY 755
            PG A  K  LK +  KP  +   IPG +  K PS    +P LP T +
Sbjct: 1117 PGTADNKPQLKPQ--KPFTSPGGIPGPNGIKMPSFMEGMPHLPFTPF 1161


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/38 (23%), Positives = 17/38 (44%)
 Frame = -3

Query: 679 IVLSGFATSDLSVDFCDARPGGRSLWKNASNAAFLRFL 566
           ++   +A  D+  + CD +PG     K       L++L
Sbjct: 478 VMAFAYAFRDMHKELCDGKPGLCDAMKPTKGTELLKYL 515


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 708 APSXRSPVPTLPLTG 752
           AP    P+P+LPL G
Sbjct: 468 APCFEEPLPSLPLPG 482


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = -3

Query: 817 DTYSVSY---EKAPRFPKGRKADRYPVSGRVGTGE 722
           +T+S+ Y   + A + P   + D Y + GR+  GE
Sbjct: 109 ETFSLLYYEFDVATKEPPPWETDSYKLIGRIAAGE 143


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,228
Number of Sequences: 438
Number of extensions: 4399
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)