Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_C04
(867 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X74874-1|CAA52862.1| 1970|Homo sapiens RNA polymerase II largest... 35 0.44
X63564-1|CAA45125.1| 1970|Homo sapiens RNA polymerase II largest... 35 0.44
BX005072-3|CAI23642.1| 226|Homo sapiens protein tyrosine phosph... 32 2.4
BC113473-1|AAI13474.1| 226|Homo sapiens protein tyrosine phosph... 32 2.4
BC093750-1|AAH93750.1| 226|Homo sapiens protein tyrosine phosph... 32 2.4
AY704151-1|AAW28790.1| 198|Homo sapiens non-receptor protein ty... 32 2.4
AY704150-1|AAW28789.1| 392|Homo sapiens non-receptor protein ty... 32 2.4
AY704148-1|AAW28787.1| 206|Homo sapiens non-receptor protein ty... 32 2.4
AY704147-1|AAW28786.1| 226|Homo sapiens non-receptor protein ty... 32 2.4
AY704146-1|AAW28785.1| 420|Homo sapiens non-receptor protein ty... 32 2.4
AY704144-1|AAW28783.1| 217|Homo sapiens non-receptor protein ty... 32 2.4
AY704142-1|AAW28781.1| 269|Homo sapiens non-receptor protein ty... 32 2.4
AY704141-1|AAW28780.1| 411|Homo sapiens non-receptor protein ty... 32 2.4
AL672108-3|CAI12201.1| 398|Homo sapiens protein tyrosine phosph... 32 2.4
AL672108-2|CAI12200.1| 226|Homo sapiens protein tyrosine phosph... 32 2.4
AL450334-4|CAI15686.1| 398|Homo sapiens protein tyrosine phosph... 32 2.4
AL450334-3|CAI15685.1| 226|Homo sapiens protein tyrosine phosph... 32 2.4
AL358791-3|CAI14090.1| 226|Homo sapiens protein tyrosine phosph... 32 2.4
AL050040-1|CAB43248.1| 398|Homo sapiens hypothetical protein pr... 32 2.4
AY704149-1|AAW28788.1| 145|Homo sapiens non-receptor protein ty... 32 3.1
AY704145-1|AAW28784.1| 136|Homo sapiens non-receptor protein ty... 32 3.1
>X74874-1|CAA52862.1| 1970|Homo sapiens RNA polymerase II largest
subunit protein.
Length = 1970
Score = 34.7 bits (76), Expect = 0.44
Identities = 20/48 (41%), Positives = 24/48 (50%)
Frame = +1
Query: 613 PASPTYQNTSSFHSEKMTPHKYTSTVQSNYSAHTPGYNVGQSPGYGRT 756
P SPTY TS +S + TS S YS +PGY+ SP Y T
Sbjct: 1911 PTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYS-PTSPTYSLT 1957
>X63564-1|CAA45125.1| 1970|Homo sapiens RNA polymerase II largest
subunit protein.
Length = 1970
Score = 34.7 bits (76), Expect = 0.44
Identities = 20/48 (41%), Positives = 24/48 (50%)
Frame = +1
Query: 613 PASPTYQNTSSFHSEKMTPHKYTSTVQSNYSAHTPGYNVGQSPGYGRT 756
P SPTY TS +S + TS S YS +PGY+ SP Y T
Sbjct: 1911 PTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYS-PTSPTYSLT 1957
>BX005072-3|CAI23642.1| 226|Homo sapiens protein tyrosine
phosphatase, non-receptor type 20B protein.
Length = 226
Score = 32.3 bits (70), Expect = 2.4
Identities = 23/68 (33%), Positives = 30/68 (44%)
Frame = +3
Query: 633 KHKLIPFREDDSAQIYEYRPKQLQCPHAWLQRGTIARLRQDRWSRELERAGHPTRRLEQC 812
K L F +D ++E + P W RG R+DRWS E E A P++ L
Sbjct: 55 KLSLRNFPHNDYEDVFEEPSESGSDPSMWTARGPF---RRDRWSSEDEEAAGPSQALS-- 109
Query: 813 PLRELRRK 836
PL RK
Sbjct: 110 PLLSDTRK 117
>BC113473-1|AAI13474.1| 226|Homo sapiens protein tyrosine
phosphatase, non-receptor type 20B protein.
Length = 226
Score = 32.3 bits (70), Expect = 2.4
Identities = 23/68 (33%), Positives = 30/68 (44%)
Frame = +3
Query: 633 KHKLIPFREDDSAQIYEYRPKQLQCPHAWLQRGTIARLRQDRWSRELERAGHPTRRLEQC 812
K L F +D ++E + P W RG R+DRWS E E A P++ L
Sbjct: 55 KLSLRNFPHNDYEDVFEEPSESGSDPSMWTARGPF---RRDRWSSEDEEAAGPSQALS-- 109
Query: 813 PLRELRRK 836
PL RK
Sbjct: 110 PLLSDTRK 117
>BC093750-1|AAH93750.1| 226|Homo sapiens protein tyrosine
phosphatase, non-receptor type 20A protein.
Length = 226
Score = 32.3 bits (70), Expect = 2.4
Identities = 23/68 (33%), Positives = 30/68 (44%)
Frame = +3
Query: 633 KHKLIPFREDDSAQIYEYRPKQLQCPHAWLQRGTIARLRQDRWSRELERAGHPTRRLEQC 812
K L F +D ++E + P W RG R+DRWS E E A P++ L
Sbjct: 55 KLSLRNFPHNDYEDVFEEPSESGSDPSMWTARGPF---RRDRWSSEDEEAAGPSQALS-- 109
Query: 813 PLRELRRK 836
PL RK
Sbjct: 110 PLLSDTRK 117
>AY704151-1|AAW28790.1| 198|Homo sapiens non-receptor protein
tyrosine phosphatase 20 variant 11 protein.
Length = 198
Score = 32.3 bits (70), Expect = 2.4
Identities = 23/68 (33%), Positives = 30/68 (44%)
Frame = +3
Query: 633 KHKLIPFREDDSAQIYEYRPKQLQCPHAWLQRGTIARLRQDRWSRELERAGHPTRRLEQC 812
K L F +D ++E + P W RG R+DRWS E E A P++ L
Sbjct: 27 KLSLRNFPHNDYEDVFEEPSESGSDPSMWTARGPF---RRDRWSSEDEEAAGPSQALS-- 81
Query: 813 PLRELRRK 836
PL RK
Sbjct: 82 PLLSDTRK 89
>AY704150-1|AAW28789.1| 392|Homo sapiens non-receptor protein
tyrosine phosphatase 20 variant 10 protein.
Length = 392
Score = 32.3 bits (70), Expect = 2.4
Identities = 23/68 (33%), Positives = 30/68 (44%)
Frame = +3
Query: 633 KHKLIPFREDDSAQIYEYRPKQLQCPHAWLQRGTIARLRQDRWSRELERAGHPTRRLEQC 812
K L F +D ++E + P W RG R+DRWS E E A P++ L
Sbjct: 27 KLSLRNFPHNDYEDVFEEPSESGSDPSMWTARGPF---RRDRWSSEDEEAAGPSQALS-- 81
Query: 813 PLRELRRK 836
PL RK
Sbjct: 82 PLLSDTRK 89
>AY704148-1|AAW28787.1| 206|Homo sapiens non-receptor protein
tyrosine phosphatase 20 variant 8 protein.
Length = 206
Score = 32.3 bits (70), Expect = 2.4
Identities = 23/68 (33%), Positives = 30/68 (44%)
Frame = +3
Query: 633 KHKLIPFREDDSAQIYEYRPKQLQCPHAWLQRGTIARLRQDRWSRELERAGHPTRRLEQC 812
K L F +D ++E + P W RG R+DRWS E E A P++ L
Sbjct: 55 KLSLRNFPHNDYEDVFEEPSESGSDPSMWTARGPF---RRDRWSSEDEEAAGPSQALS-- 109
Query: 813 PLRELRRK 836
PL RK
Sbjct: 110 PLLSDTRK 117
>AY704147-1|AAW28786.1| 226|Homo sapiens non-receptor protein
tyrosine phosphatase 20 variant 7 protein.
Length = 226
Score = 32.3 bits (70), Expect = 2.4
Identities = 23/68 (33%), Positives = 30/68 (44%)
Frame = +3
Query: 633 KHKLIPFREDDSAQIYEYRPKQLQCPHAWLQRGTIARLRQDRWSRELERAGHPTRRLEQC 812
K L F +D ++E + P W RG R+DRWS E E A P++ L
Sbjct: 55 KLSLRNFPHNDYEDVFEEPSESGSDPSMWTARGPF---RRDRWSSEDEEAAGPSQALS-- 109
Query: 813 PLRELRRK 836
PL RK
Sbjct: 110 PLLSDTRK 117
>AY704146-1|AAW28785.1| 420|Homo sapiens non-receptor protein
tyrosine phosphatase 20 variant 6 protein.
Length = 420
Score = 32.3 bits (70), Expect = 2.4
Identities = 23/68 (33%), Positives = 30/68 (44%)
Frame = +3
Query: 633 KHKLIPFREDDSAQIYEYRPKQLQCPHAWLQRGTIARLRQDRWSRELERAGHPTRRLEQC 812
K L F +D ++E + P W RG R+DRWS E E A P++ L
Sbjct: 55 KLSLRNFPHNDYEDVFEEPSESGSDPSMWTARGPF---RRDRWSSEDEEAAGPSQALS-- 109
Query: 813 PLRELRRK 836
PL RK
Sbjct: 110 PLLSDTRK 117
>AY704144-1|AAW28783.1| 217|Homo sapiens non-receptor protein
tyrosine phosphatase 20 variant 4 protein.
Length = 217
Score = 32.3 bits (70), Expect = 2.4
Identities = 23/68 (33%), Positives = 30/68 (44%)
Frame = +3
Query: 633 KHKLIPFREDDSAQIYEYRPKQLQCPHAWLQRGTIARLRQDRWSRELERAGHPTRRLEQC 812
K L F +D ++E + P W RG R+DRWS E E A P++ L
Sbjct: 46 KLSLRNFPHNDYEDVFEEPSESGSDPSMWTARGPF---RRDRWSSEDEEAAGPSQALS-- 100
Query: 813 PLRELRRK 836
PL RK
Sbjct: 101 PLLSDTRK 108
>AY704142-1|AAW28781.1| 269|Homo sapiens non-receptor protein
tyrosine phosphatase 20 variant 2 protein.
Length = 269
Score = 32.3 bits (70), Expect = 2.4
Identities = 23/68 (33%), Positives = 30/68 (44%)
Frame = +3
Query: 633 KHKLIPFREDDSAQIYEYRPKQLQCPHAWLQRGTIARLRQDRWSRELERAGHPTRRLEQC 812
K L F +D ++E + P W RG R+DRWS E E A P++ L
Sbjct: 46 KLSLRNFPHNDYEDVFEEPSESGSDPSMWTARGPF---RRDRWSSEDEEAAGPSQALS-- 100
Query: 813 PLRELRRK 836
PL RK
Sbjct: 101 PLLSDTRK 108
>AY704141-1|AAW28780.1| 411|Homo sapiens non-receptor protein
tyrosine phosphatase 20 variant 1 protein.
Length = 411
Score = 32.3 bits (70), Expect = 2.4
Identities = 23/68 (33%), Positives = 30/68 (44%)
Frame = +3
Query: 633 KHKLIPFREDDSAQIYEYRPKQLQCPHAWLQRGTIARLRQDRWSRELERAGHPTRRLEQC 812
K L F +D ++E + P W RG R+DRWS E E A P++ L
Sbjct: 46 KLSLRNFPHNDYEDVFEEPSESGSDPSMWTARGPF---RRDRWSSEDEEAAGPSQALS-- 100
Query: 813 PLRELRRK 836
PL RK
Sbjct: 101 PLLSDTRK 108
>AL672108-3|CAI12201.1| 398|Homo sapiens protein tyrosine
phosphatase, non-receptor type 20A protein.
Length = 398
Score = 32.3 bits (70), Expect = 2.4
Identities = 23/68 (33%), Positives = 30/68 (44%)
Frame = +3
Query: 633 KHKLIPFREDDSAQIYEYRPKQLQCPHAWLQRGTIARLRQDRWSRELERAGHPTRRLEQC 812
K L F +D ++E + P W RG R+DRWS E E A P++ L
Sbjct: 33 KLSLRNFPHNDYEDVFEEPSESGSDPSMWTARGPF---RRDRWSSEDEEAAGPSQALS-- 87
Query: 813 PLRELRRK 836
PL RK
Sbjct: 88 PLLSDTRK 95
>AL672108-2|CAI12200.1| 226|Homo sapiens protein tyrosine
phosphatase, non-receptor type 20A protein.
Length = 226
Score = 32.3 bits (70), Expect = 2.4
Identities = 23/68 (33%), Positives = 30/68 (44%)
Frame = +3
Query: 633 KHKLIPFREDDSAQIYEYRPKQLQCPHAWLQRGTIARLRQDRWSRELERAGHPTRRLEQC 812
K L F +D ++E + P W RG R+DRWS E E A P++ L
Sbjct: 55 KLSLRNFPHNDYEDVFEEPSESGSDPSMWTARGPF---RRDRWSSEDEEAAGPSQALS-- 109
Query: 813 PLRELRRK 836
PL RK
Sbjct: 110 PLLSDTRK 117
>AL450334-4|CAI15686.1| 398|Homo sapiens protein tyrosine
phosphatase, non-receptor type 20A protein.
Length = 398
Score = 32.3 bits (70), Expect = 2.4
Identities = 23/68 (33%), Positives = 30/68 (44%)
Frame = +3
Query: 633 KHKLIPFREDDSAQIYEYRPKQLQCPHAWLQRGTIARLRQDRWSRELERAGHPTRRLEQC 812
K L F +D ++E + P W RG R+DRWS E E A P++ L
Sbjct: 33 KLSLRNFPHNDYEDVFEEPSESGSDPSMWTARGPF---RRDRWSSEDEEAAGPSQALS-- 87
Query: 813 PLRELRRK 836
PL RK
Sbjct: 88 PLLSDTRK 95
>AL450334-3|CAI15685.1| 226|Homo sapiens protein tyrosine
phosphatase, non-receptor type 20A protein.
Length = 226
Score = 32.3 bits (70), Expect = 2.4
Identities = 23/68 (33%), Positives = 30/68 (44%)
Frame = +3
Query: 633 KHKLIPFREDDSAQIYEYRPKQLQCPHAWLQRGTIARLRQDRWSRELERAGHPTRRLEQC 812
K L F +D ++E + P W RG R+DRWS E E A P++ L
Sbjct: 55 KLSLRNFPHNDYEDVFEEPSESGSDPSMWTARGPF---RRDRWSSEDEEAAGPSQALS-- 109
Query: 813 PLRELRRK 836
PL RK
Sbjct: 110 PLLSDTRK 117
>AL358791-3|CAI14090.1| 226|Homo sapiens protein tyrosine
phosphatase, non-receptor type 20B protein.
Length = 226
Score = 32.3 bits (70), Expect = 2.4
Identities = 23/68 (33%), Positives = 30/68 (44%)
Frame = +3
Query: 633 KHKLIPFREDDSAQIYEYRPKQLQCPHAWLQRGTIARLRQDRWSRELERAGHPTRRLEQC 812
K L F +D ++E + P W RG R+DRWS E E A P++ L
Sbjct: 55 KLSLRNFPHNDYEDVFEEPSESGSDPSMWTARGPF---RRDRWSSEDEEAAGPSQALS-- 109
Query: 813 PLRELRRK 836
PL RK
Sbjct: 110 PLLSDTRK 117
>AL050040-1|CAB43248.1| 398|Homo sapiens hypothetical protein
protein.
Length = 398
Score = 32.3 bits (70), Expect = 2.4
Identities = 23/68 (33%), Positives = 30/68 (44%)
Frame = +3
Query: 633 KHKLIPFREDDSAQIYEYRPKQLQCPHAWLQRGTIARLRQDRWSRELERAGHPTRRLEQC 812
K L F +D ++E + P W RG R+DRWS E E A P++ L
Sbjct: 33 KLSLRNFPHNDYEDVFEEPSESGSDPSMWTARGPF---RRDRWSSEDEEAAGPSQALS-- 87
Query: 813 PLRELRRK 836
PL RK
Sbjct: 88 PLLSDTRK 95
>AY704149-1|AAW28788.1| 145|Homo sapiens non-receptor protein
tyrosine phosphatase 20 variant 9 protein.
Length = 145
Score = 31.9 bits (69), Expect = 3.1
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +3
Query: 633 KHKLIPFREDDSAQIYEYRPKQLQCPHAWLQRGTIARLRQDRWSRELERAGHPTRRL 803
K L F +D ++E + P W RG R+DRWS E E A P++ L
Sbjct: 55 KLSLRNFPHNDYEDVFEEPSESGSDPSMWTARGPF---RRDRWSSEDEEAAGPSQAL 108
>AY704145-1|AAW28784.1| 136|Homo sapiens non-receptor protein
tyrosine phosphatase 20 variant 5 protein.
Length = 136
Score = 31.9 bits (69), Expect = 3.1
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +3
Query: 633 KHKLIPFREDDSAQIYEYRPKQLQCPHAWLQRGTIARLRQDRWSRELERAGHPTRRL 803
K L F +D ++E + P W RG R+DRWS E E A P++ L
Sbjct: 46 KLSLRNFPHNDYEDVFEEPSESGSDPSMWTARGPF---RRDRWSSEDEEAAGPSQAL 99
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,212,104
Number of Sequences: 237096
Number of extensions: 2340106
Number of successful extensions: 5489
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 4956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5480
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 11095746082
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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