Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_C02
(884 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 32 0.094
SPBC3B9.04 |||mitochondrial methyltransferase |Schizosaccharomyc... 28 1.5
SPAC1805.05 |cki3||serine/threonine protein kinase Cki3|Schizosa... 26 6.2
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 26 6.2
SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103 |Sch... 26 6.2
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 26 8.2
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom... 26 8.2
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|... 26 8.2
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 32.3 bits (70), Expect = 0.094
Identities = 21/79 (26%), Positives = 27/79 (34%)
Frame = +1
Query: 163 PPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSXSDQRSVYS*GES 342
PP G T P T + PP ST S G P + TS + S+ G S
Sbjct: 292 PPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNS 351
Query: 343 GATDSAGGPXLQQSALPKP 399
+ P S+ P
Sbjct: 352 TTPVTPTVPPTSTSSTSTP 370
Score = 31.5 bits (68), Expect = 0.17
Identities = 18/60 (30%), Positives = 22/60 (36%)
Frame = +1
Query: 163 PPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSXSDQRSVYS*GES 342
PP G T P T + PP ST S G P + TS + S+ G S
Sbjct: 346 PPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNS 405
Score = 26.6 bits (56), Expect = 4.7
Identities = 20/74 (27%), Positives = 29/74 (39%)
Frame = +2
Query: 110 LSTLASMTELVYQAGCSAPPVVVTLTSSTPNRSHRGPDAVPFHQAQRALSATDKETSRKR 289
LST + T ++ P+ T TSST S P ++ T T+
Sbjct: 243 LSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVT 302
Query: 290 PTALQXATNGQSTP 331
PT +T+ STP
Sbjct: 303 PTVPPTSTSSTSTP 316
>SPBC3B9.04 |||mitochondrial methyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 248
Score = 28.3 bits (60), Expect = 1.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 501 PHLLAVSLYNQIFDFHLTHIMSQICIEAKYFLRY 602
P+ ++S+YNQI D + I + YFLRY
Sbjct: 45 PNSNSISIYNQIADKYSRKITREEIFSGIYFLRY 78
>SPAC1805.05 |cki3||serine/threonine protein kinase
Cki3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 439
Score = 26.2 bits (55), Expect = 6.2
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +2
Query: 185 TSSTPNRSHRGPDAVPFHQA-QRALSATDKETSRKRPTALQXATNGQSTPKESPEPQIQQ 361
T T NR R P+ + Q LS+ K+T AT P ++ PQ+QQ
Sbjct: 322 TQGTNNR--RQSTIPPYARTRQNLLSSPSKQTPVNNVVDASVATQKDGIPGKAASPQVQQ 379
Query: 362 E 364
+
Sbjct: 380 Q 380
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 26.2 bits (55), Expect = 6.2
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = -1
Query: 149 LDRRAPSLRPTLKGVEVILFFYLSTSQQVFFLTGIK 42
L+ PS+R K V ++++ LSTS ++ F+T ++
Sbjct: 170 LENANPSVREEAKEVLLLIYKNLSTSAKMQFITDVE 205
>SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 26.2 bits (55), Expect = 6.2
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = +2
Query: 140 VYQAGCSAPPVVVTLTSSTPNRSHRGPDAVPFHQAQRALSATDKET-SRKRPTALQXATN 316
V+ GC PP +V+ + + +A F A++ T++ S + TA ++N
Sbjct: 80 VFNLGCPPPPYIVSANTYMAPKGMNAMNAAAFVPMMPAVNLTNQVAFSAPQTTA---SSN 136
Query: 317 GQSTPKESPEPQIQQ 361
Q T ++ PQ +
Sbjct: 137 TQLTQQQQSLPQTNE 151
>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 25.8 bits (54), Expect = 8.2
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = +2
Query: 200 NRSHRGPDAVPFHQAQRALSATDKETSRKRPTALQXATNGQSTPKESPEPQ 352
++S P PF+ A + + RK P + QS+ KE EP+
Sbjct: 607 HKSFHFPSGEPFNTRINATAIFTVGSGRKNPQSSSSLMFNQSSVKEEEEPE 657
>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 25.8 bits (54), Expect = 8.2
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Frame = +2
Query: 536 LRFSFNSHYVTNMYRG*VF--LE---VRFRLPF*NSA-IVIKDAXNNVCFLLCLL 682
L+F +TN Y ++ LE ++FR+P + I++KD N CFL LL
Sbjct: 697 LKFFVRERSITNKYEDILYKILEACFMQFRIPIQHVLNILVKDGTLNFCFLKPLL 751
>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1369
Score = 25.8 bits (54), Expect = 8.2
Identities = 11/45 (24%), Positives = 23/45 (51%)
Frame = +1
Query: 193 DSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSXSDQRSVY 327
+++P+ P+ G + ++ S S + + + NG D+R VY
Sbjct: 1284 ENDPKNPKAGSQGSGNTSASEDSKTEKPKTRTNNGLQVPDKRVVY 1328
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,888,395
Number of Sequences: 5004
Number of extensions: 53669
Number of successful extensions: 162
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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