Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_C01
         (876 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0358 - 17177253-17177369,17177635-17177931,17178961-171790...    31   1.2  
06_03_0833 - 25196091-25196372,25196464-25196565,25196640-251968...    31   1.6  
03_01_0526 + 3956909-3957071,3957262-3957317,3957398-3957462,395...    29   3.7  
08_01_0156 - 1233431-1233925                                           29   6.5  
06_03_0218 + 18219956-18220555                                         28   8.5  
03_06_0149 - 31987183-31987630,31987813-31987874                       28   8.5  
03_04_0061 - 16949038-16950006                                         28   8.5  

>07_03_0358 -
           17177253-17177369,17177635-17177931,17178961-17179032,
           17179117-17179383,17179752-17179910,17180194-17180295,
           17180696-17180767,17181105-17181200,17181710-17181871,
           17181941-17182021,17182837-17183094,17183173-17183275,
           17183412-17183542,17184827-17184919,17184999-17185099,
           17186271-17186355,17186487-17186701,17186779-17186842,
           17187128-17187214,17188922-17189022,17190206-17190397,
           17190533-17190599,17191211-17191351
          Length = 1020

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -2

Query: 209 QRKARSSTKGNKEKQXXHCKDEGGGXAKRKQG 114
           Q K  S+T G ++ +  H  +EGGG  +RK+G
Sbjct: 885 QWKTSSNTPGKRKDRSKHEDEEGGGEKRRKKG 916


>06_03_0833 -
           25196091-25196372,25196464-25196565,25196640-25196838,
           25196978-25197278,25197471-25197645,25197842-25198012,
           25198207-25198239
          Length = 420

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = +2

Query: 530 CWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPCRLP 688
           CWR  +        T  D Q    +    +KD    P + PSC L+F P   P
Sbjct: 283 CWRHFLNQDFAMFATAGDDQWNPEDHLPSFKDDSLIPYDVPSCHLIFIPLLQP 335


>03_01_0526 +
           3956909-3957071,3957262-3957317,3957398-3957462,
           3957560-3958006,3958102-3958227,3958328-3958511,
           3958788-3958943
          Length = 398

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +1

Query: 472 KEHVKQKASKRPGNRKKAALLA 537
           K+ +K  A KRPGN +K ALL+
Sbjct: 165 KDAIKSSAEKRPGNAEKEALLS 186


>08_01_0156 - 1233431-1233925
          Length = 164

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
 Frame = -1

Query: 783 LGANDXHRTEIXTA*AMRKRHASRREK--GGQVSGKRQGRNRRAHEGASRGKRLVSL*SC 610
           LG  D   TE+  A A     A+R E+  GG   G R G   RA +   +G     +   
Sbjct: 89  LGDADATATEVDAAAAAEAEAAARGERGDGGGDGGGRAGGRGRARDEREKGAAADRVLGV 148

Query: 609 RVSPPLT 589
           R SP ++
Sbjct: 149 RASPTVS 155


>06_03_0218 + 18219956-18220555
          Length = 199

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -1

Query: 717 SRREKGGQVSG--KRQGRNRRAHEGASRGKRLVS 622
           +RRE+  + +G  KR+GR R    G  RGKR  S
Sbjct: 106 ARRERRLEAAGAEKREGRRRGGSSGGLRGKRRAS 139


>03_06_0149 - 31987183-31987630,31987813-31987874
          Length = 169

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 738 AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRG 637
           A+ + H   R +   +  +R+GR R AHEG   G
Sbjct: 76  AVARGHGLERLQEAGIEAERRGRRRNAHEGIKIG 109


>03_04_0061 - 16949038-16950006
          Length = 322

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 612 RTIKIPGVSPWKLPRALSCSDPAAYRIPVRLSPFGKRGA 728
           RT+K PG+   ++PRA+  + P  Y   VR +   +R A
Sbjct: 255 RTMKGPGLGGARVPRAVFRASPRRYYAAVRTARKARRSA 293


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,842,736
Number of Sequences: 37544
Number of extensions: 434056
Number of successful extensions: 1678
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1672
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)