Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP04_F_B23
(883 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC022326-1|AAH22326.2| 59|Homo sapiens small EDRK-rich factor ... 44 6e-04
BC015491-1|AAH15491.2| 59|Homo sapiens small EDRK-rich factor ... 44 6e-04
AF073298-1|AAC63516.1| 59|Homo sapiens small EDRK-rich factor ... 44 6e-04
BC021174-1|AAH21174.1| 62|Homo sapiens small EDRK-rich factor ... 39 0.021
AF073518-1|AAC63517.1| 62|Homo sapiens small EDRK-rich factor ... 39 0.021
BC104738-1|AAI04739.1| 110|Homo sapiens small EDRK-rich factor ... 37 0.084
BC103687-1|AAI03688.1| 110|Homo sapiens small EDRK-rich factor ... 37 0.084
BC101970-1|AAI01971.1| 110|Homo sapiens SERF1B protein protein. 37 0.084
BC093882-1|AAH93882.1| 110|Homo sapiens small EDRK-rich factor ... 37 0.084
BC093880-1|AAH93880.1| 110|Homo sapiens small EDRK-rich factor ... 37 0.084
BC035932-1|AAH35932.1| 110|Homo sapiens small EDRK-rich factor ... 37 0.084
AF073519-1|AAC63518.1| 110|Homo sapiens small EDRK-rich factor ... 37 0.084
>BC022326-1|AAH22326.2| 59|Homo sapiens small EDRK-rich factor 2
protein.
Length = 59
Score = 44.4 bits (100), Expect = 6e-04
Identities = 26/52 (50%), Positives = 30/52 (57%)
Frame = +1
Query: 259 MTRGNQRDLARAKNQKKQVEMQKKKNASEKTGLSLQERKHRXC*INARKTTK 414
MTRGNQR+LAR KN KKQ + K K + GLS RK R I +K K
Sbjct: 1 MTRGNQRELARQKNMKKQSDSVKGKRRDD--GLSAAARKQRDSEIMQQKQKK 50
>BC015491-1|AAH15491.2| 59|Homo sapiens small EDRK-rich factor 2
protein.
Length = 59
Score = 44.4 bits (100), Expect = 6e-04
Identities = 26/52 (50%), Positives = 30/52 (57%)
Frame = +1
Query: 259 MTRGNQRDLARAKNQKKQVEMQKKKNASEKTGLSLQERKHRXC*INARKTTK 414
MTRGNQR+LAR KN KKQ + K K + GLS RK R I +K K
Sbjct: 1 MTRGNQRELARQKNMKKQSDSVKGKRRDD--GLSAAARKQRDSEIMQQKQKK 50
>AF073298-1|AAC63516.1| 59|Homo sapiens small EDRK-rich factor 2
protein.
Length = 59
Score = 44.4 bits (100), Expect = 6e-04
Identities = 26/52 (50%), Positives = 30/52 (57%)
Frame = +1
Query: 259 MTRGNQRDLARAKNQKKQVEMQKKKNASEKTGLSLQERKHRXC*INARKTTK 414
MTRGNQR+LAR KN KKQ + K K + GLS RK R I +K K
Sbjct: 1 MTRGNQRELARQKNMKKQSDSVKGKRRDD--GLSAAARKQRDSEIMQQKQKK 50
>BC021174-1|AAH21174.1| 62|Homo sapiens small EDRK-rich factor 1A
(telomeric) protein.
Length = 62
Score = 39.1 bits (87), Expect = 0.021
Identities = 20/41 (48%), Positives = 26/41 (63%)
Frame = +1
Query: 259 MTRGNQRDLARAKNQKKQVEMQKKKNASEKTGLSLQERKHR 381
M RGNQR+LAR KN KK E+ K K ++ L+ +RK R
Sbjct: 1 MARGNQRELARQKNMKKTQEISKGKR--KEDSLTASQRKQR 39
>AF073518-1|AAC63517.1| 62|Homo sapiens small EDRK-rich factor 1,
short isoform protein.
Length = 62
Score = 39.1 bits (87), Expect = 0.021
Identities = 20/41 (48%), Positives = 26/41 (63%)
Frame = +1
Query: 259 MTRGNQRDLARAKNQKKQVEMQKKKNASEKTGLSLQERKHR 381
M RGNQR+LAR KN KK E+ K K ++ L+ +RK R
Sbjct: 1 MARGNQRELARQKNMKKTQEISKGKR--KEDSLTASQRKQR 39
>BC104738-1|AAI04739.1| 110|Homo sapiens small EDRK-rich factor 1B
(centromeric) protein.
Length = 110
Score = 37.1 bits (82), Expect = 0.084
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +1
Query: 259 MTRGNQRDLARAKNQKKQVEMQKKKNASEKTGLSLQERK 375
M RGNQR+LAR KN KK E+ K K ++ L+ +RK
Sbjct: 1 MARGNQRELARQKNMKKTQEISKGKR--KEDSLTASQRK 37
>BC103687-1|AAI03688.1| 110|Homo sapiens small EDRK-rich factor 1B
(centromeric) protein.
Length = 110
Score = 37.1 bits (82), Expect = 0.084
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +1
Query: 259 MTRGNQRDLARAKNQKKQVEMQKKKNASEKTGLSLQERK 375
M RGNQR+LAR KN KK E+ K K ++ L+ +RK
Sbjct: 1 MARGNQRELARQKNMKKTQEISKGKR--KEDSLTASQRK 37
>BC101970-1|AAI01971.1| 110|Homo sapiens SERF1B protein protein.
Length = 110
Score = 37.1 bits (82), Expect = 0.084
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +1
Query: 259 MTRGNQRDLARAKNQKKQVEMQKKKNASEKTGLSLQERK 375
M RGNQR+LAR KN KK E+ K K ++ L+ +RK
Sbjct: 1 MARGNQRELARQKNMKKTQEISKGKR--KEDSLTASQRK 37
>BC093882-1|AAH93882.1| 110|Homo sapiens small EDRK-rich factor 1A,
telomeric protein.
Length = 110
Score = 37.1 bits (82), Expect = 0.084
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +1
Query: 259 MTRGNQRDLARAKNQKKQVEMQKKKNASEKTGLSLQERK 375
M RGNQR+LAR KN KK E+ K K ++ L+ +RK
Sbjct: 1 MARGNQRELARQKNMKKTQEISKGKR--KEDSLTASQRK 37
>BC093880-1|AAH93880.1| 110|Homo sapiens small EDRK-rich factor 1A
(telomeric) protein.
Length = 110
Score = 37.1 bits (82), Expect = 0.084
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +1
Query: 259 MTRGNQRDLARAKNQKKQVEMQKKKNASEKTGLSLQERK 375
M RGNQR+LAR KN KK E+ K K ++ L+ +RK
Sbjct: 1 MARGNQRELARQKNMKKTQEISKGKR--KEDSLTASQRK 37
>BC035932-1|AAH35932.1| 110|Homo sapiens small EDRK-rich factor 1A
(telomeric) protein.
Length = 110
Score = 37.1 bits (82), Expect = 0.084
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +1
Query: 259 MTRGNQRDLARAKNQKKQVEMQKKKNASEKTGLSLQERK 375
M RGNQR+LAR KN KK E+ K K ++ L+ +RK
Sbjct: 1 MARGNQRELARQKNMKKTQEISKGKR--KEDSLTASQRK 37
>AF073519-1|AAC63518.1| 110|Homo sapiens small EDRK-rich factor 1,
long isoform protein.
Length = 110
Score = 37.1 bits (82), Expect = 0.084
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +1
Query: 259 MTRGNQRDLARAKNQKKQVEMQKKKNASEKTGLSLQERK 375
M RGNQR+LAR KN KK E+ K K ++ L+ +RK
Sbjct: 1 MARGNQRELARQKNMKKTQEISKGKR--KEDSLTASQRK 37
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,227,297
Number of Sequences: 237096
Number of extensions: 1660104
Number of successful extensions: 2852
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2797
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11270645666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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