Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_B22
         (898 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10...   101   1e-22
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a...   101   2e-22
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    27   3.6  
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    27   3.6  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    26   8.4  

>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score =  101 bits (243), Expect = 1e-22
 Identities = 51/113 (45%), Positives = 63/113 (55%)
 Frame = +2

Query: 134 ALXAVLQSSKDKXRNFLEXVXLQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQ 313
           ++  +L+ S++K RNF E V LQIGLKNYDPQ+DKRFSGT+KL  +PRP M +C+LGD  
Sbjct: 12  SVETILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPNMSICILGDAH 71

Query: 314 HCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPRFVG 472
             D AK   V  M                           SE LIKQIPR +G
Sbjct: 72  DLDRAKHGGVDAMSVDDLKKLNKNKKLVKKLAKKYDAFIASEVLIKQIPRLLG 124



 Score =  100 bits (240), Expect = 2e-22
 Identities = 47/72 (65%), Positives = 57/72 (79%)
 Frame = +3

Query: 453 RFPVLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDE 632
           + P LLGPGL+KAGKFP  +SH + +  KI EVK TIKFQ+KKVLCL VAVGHVDM  ++
Sbjct: 118 QIPRLLGPGLSKAGKFPSPVSHSDDLYGKIIEVKSTIKFQLKKVLCLGVAVGHVDMAEEQ 177

Query: 633 LAQNVHLSINFL 668
           LA N+ L+INFL
Sbjct: 178 LAANLSLAINFL 189



 Score = 45.6 bits (103), Expect = 1e-05
 Identities = 21/28 (75%), Positives = 23/28 (82%)
 Frame = +1

Query: 667 LVSLLKKHWQNVRSLHMKSTMGPPQRLY 750
           LVSLLKK WQN+ SL +KSTMG P RLY
Sbjct: 189 LVSLLKKGWQNIGSLVIKSTMGKPYRLY 216


>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 216

 Score =  101 bits (241), Expect = 2e-22
 Identities = 51/109 (46%), Positives = 61/109 (55%)
 Frame = +2

Query: 146 VLQSSKDKXRNFLEXVXLQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDE 325
           +L+ S++K RNF E V LQIGLKNYDPQ+DKRFSGT+KL  +PRP M +C+LGD    D 
Sbjct: 16  ILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPNMAICILGDAHDLDR 75

Query: 326 AKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPRFVG 472
           AK   V  M                           SE LIKQIPR +G
Sbjct: 76  AKHGGVDAMSVDDLKKLNKNKKLVKKLAKKYDAFIASEVLIKQIPRLLG 124



 Score = 97.9 bits (233), Expect = 2e-21
 Identities = 44/72 (61%), Positives = 57/72 (79%)
 Frame = +3

Query: 453 RFPVLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDE 632
           + P LLGPGL+KAGKFP  +SH + +  KI EVK TIKFQ+KKVLCL VAVGHV+M+ ++
Sbjct: 118 QIPRLLGPGLSKAGKFPSPVSHADDLYGKITEVKSTIKFQLKKVLCLGVAVGHVEMSEEQ 177

Query: 633 LAQNVHLSINFL 668
           L  N+ L++NFL
Sbjct: 178 LIANIMLAVNFL 189



 Score = 46.0 bits (104), Expect = 7e-06
 Identities = 21/28 (75%), Positives = 23/28 (82%)
 Frame = +1

Query: 667 LVSLLKKHWQNVRSLHMKSTMGPPQRLY 750
           LVSLLKK WQN+ SL +KSTMG P RLY
Sbjct: 189 LVSLLKKGWQNIGSLVVKSTMGKPHRLY 216


>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -1

Query: 631 SSGVMSTWPTATERHNTFFIWNLMVPLTSSIFC 533
           S+G   ++ T T R   F  WN+++   +++FC
Sbjct: 236 STGYKGSYLTVTNRDAVFVGWNIVIGGFATVFC 268


>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = +3

Query: 522 ESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQNVHLSINFL 668
           E + +++    G   F         +  GHV  T  ELA+NV   + F+
Sbjct: 176 EQLKREVVSAYGATYFNSAPCSSFMIKCGHVSNTSTELAENVESILQFV 224


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = -3

Query: 644  ILSKLIRSHVHMANCYRKTQHLLHLELNGSLD-FIN-LLRHGLLVGEKTREFTSFVQ 480
            +L K++    + ++C+++ +HL+H+ L      F N  L+   L+      F  FVQ
Sbjct: 1047 VLMKVVGVFANYSDCFQRNRHLVHMVLLCCTHVFYNQTLKPATLIDSALDVFLCFVQ 1103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,114,895
Number of Sequences: 5004
Number of extensions: 61611
Number of successful extensions: 179
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)