Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_B19
         (847 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   6.2  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   6.2  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   6.2  

>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +2

Query: 656 KVMQYL*KNYRIS*LRSVERRYNNN 730
           K++  L  NY+ S   +    YNNN
Sbjct: 80  KIISSLSNNYKYSNYNNYNNNYNNN 104


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +2

Query: 656 KVMQYL*KNYRIS*LRSVERRYNNN 730
           K++  L  NY+ S   +    YNNN
Sbjct: 80  KIISSLSNNYKYSNYNNYNNNYNNN 104


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 304 WSHLDSLIFTKLEIHVQPAIRKLEYSL 384
           + H D  +   L++H+Q AIR  EY L
Sbjct: 671 YKHKDVDVTLPLDLHIQNAIR--EYGL 695


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,526
Number of Sequences: 438
Number of extensions: 5006
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)