Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_B12
         (863 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    26   0.52 
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    25   1.2  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   6.3  
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    22   8.4  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   8.4  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 25.8 bits (54), Expect = 0.52
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 162 NSENHLKILEPMLVIRRNNNHKMYFSLVNDNIT 64
           N   +  I++   ++ + NN K+Y S VN N+T
Sbjct: 508 NFSKNNTIVDISKLVNKRNNAKIYTSSVNSNLT 540


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 408 QQSRLWLQTLRYKCKKQHR 464
           +Q ++W Q  R K KK+H+
Sbjct: 50  RQIKIWFQNRRMKWKKEHK 68


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 12/50 (24%), Positives = 25/50 (50%)
 Frame = -2

Query: 643 IIIRSSSGNTKFFELFKSFYYSSLCLSMD*ILTLKLIQYWILSRIILNIT 494
           I++ ++ G +K      +F Y+   + M  IL L+  + W+    + N+T
Sbjct: 189 ILLETAMGVSKPTRDHNAFEYAMAVMKMCDILHLRHTKIWLRPDWLFNLT 238


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 408 QQSRLWLQTLRYKCKKQHR 464
           +Q ++W Q  R K KK+ R
Sbjct: 50  RQIKIWFQNRRMKLKKELR 68


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +3

Query: 408 QQSRLWLQTLRYKCKKQHR 464
           +Q ++W Q  R K KK+++
Sbjct: 312 RQIKIWFQNRRMKWKKENK 330


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,000
Number of Sequences: 438
Number of extensions: 3332
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)