Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_B07
         (920 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U34051-1|AAC50278.1|  367|Homo sapiens cyclin-dependent kinase 5...    33   1.9  
DQ307839-1|ABB96255.1|  367|Homo sapiens cyclin-dependent kinase...    33   1.9  
BC041771-1|AAH41771.1|  367|Homo sapiens cyclin-dependent kinase...    33   1.9  
AC097468-1|AAX88916.1|  367|Homo sapiens unknown protein.              33   1.9  
X07881-1|CAA30728.1|  309|Homo sapiens proline-rich protein G1 p...    31   7.8  
BC096212-1|AAH96212.1|  162|Homo sapiens PRB3 protein protein.         31   7.8  
BC096211-1|AAH96211.1|  309|Homo sapiens PRB3 protein protein.         31   7.8  
BC096210-1|AAH96210.1|  309|Homo sapiens PRB3 protein protein.         31   7.8  
BC096209-1|AAH96209.1|  309|Homo sapiens PRB3 protein protein.         31   7.8  

>U34051-1|AAC50278.1|  367|Homo sapiens cyclin-dependent kinase 5
           activator isoform p39i protein.
          Length = 367

 Score = 32.7 bits (71), Expect = 1.9
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = -3

Query: 690 PXXGGEKK*XPPXXGXXKNPPPPPP 616
           P  GG     PP  G  K PPPPPP
Sbjct: 137 PPSGGSAAAQPPGSGGGKPPPPPPP 161


>DQ307839-1|ABB96255.1|  367|Homo sapiens cyclin-dependent kinase 5,
           regulatory subunit 2 (p39) protein.
          Length = 367

 Score = 32.7 bits (71), Expect = 1.9
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = -3

Query: 690 PXXGGEKK*XPPXXGXXKNPPPPPP 616
           P  GG     PP  G  K PPPPPP
Sbjct: 137 PPSGGSAAAQPPGSGGGKPPPPPPP 161


>BC041771-1|AAH41771.1|  367|Homo sapiens cyclin-dependent kinase 5,
           regulatory subunit 2 (p39) protein.
          Length = 367

 Score = 32.7 bits (71), Expect = 1.9
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = -3

Query: 690 PXXGGEKK*XPPXXGXXKNPPPPPP 616
           P  GG     PP  G  K PPPPPP
Sbjct: 137 PPSGGSAAAQPPGSGGGKPPPPPPP 161


>AC097468-1|AAX88916.1|  367|Homo sapiens unknown protein.
          Length = 367

 Score = 32.7 bits (71), Expect = 1.9
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = -3

Query: 690 PXXGGEKK*XPPXXGXXKNPPPPPP 616
           P  GG     PP  G  K PPPPPP
Sbjct: 137 PPSGGSAAAQPPGSGGGKPPPPPPP 161


>X07881-1|CAA30728.1|  309|Homo sapiens proline-rich protein G1
           protein.
          Length = 309

 Score = 30.7 bits (66), Expect = 7.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 693 PPXXGGEKK*XPPXXGXXKNPPPPP 619
           PP  G  ++  PP  G  + PPPPP
Sbjct: 270 PPPGGNPQQPLPPPAGKPQGPPPPP 294


>BC096212-1|AAH96212.1|  162|Homo sapiens PRB3 protein protein.
          Length = 162

 Score = 30.7 bits (66), Expect = 7.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 693 PPXXGGEKK*XPPXXGXXKNPPPPP 619
           PP  G  ++  PP  G  + PPPPP
Sbjct: 123 PPPGGNPQQPLPPPAGKPQGPPPPP 147


>BC096211-1|AAH96211.1|  309|Homo sapiens PRB3 protein protein.
          Length = 309

 Score = 30.7 bits (66), Expect = 7.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 693 PPXXGGEKK*XPPXXGXXKNPPPPP 619
           PP  G  ++  PP  G  + PPPPP
Sbjct: 270 PPPGGNPQQPLPPPAGKPQGPPPPP 294


>BC096210-1|AAH96210.1|  309|Homo sapiens PRB3 protein protein.
          Length = 309

 Score = 30.7 bits (66), Expect = 7.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 693 PPXXGGEKK*XPPXXGXXKNPPPPP 619
           PP  G  ++  PP  G  + PPPPP
Sbjct: 270 PPPGGNPQQPLPPPAGKPQGPPPPP 294


>BC096209-1|AAH96209.1|  309|Homo sapiens PRB3 protein protein.
          Length = 309

 Score = 30.7 bits (66), Expect = 7.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 693 PPXXGGEKK*XPPXXGXXKNPPPPP 619
           PP  G  ++  PP  G  + PPPPP
Sbjct: 270 PPPGGNPQQPLPPPAGKPQGPPPPP 294


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,655,307
Number of Sequences: 237096
Number of extensions: 1354705
Number of successful extensions: 15978
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8864
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11992411152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)