Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_B02
         (904 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb...    29   1.2  
SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2 |Sch...    28   2.1  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    27   2.8  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    26   6.4  
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi...    26   6.4  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    26   8.4  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   8.4  
SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces p...    26   8.4  
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    26   8.4  

>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 394

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +2

Query: 308 KKVLEDI-EKDNEDVEMSSDDENVVVDSEGGKKRVFNTKTLKDQNGQY 448
           K VLED+ +KDNE     SD+E+ V D E      F+ K     N +Y
Sbjct: 160 KGVLEDVLKKDNELKFNDSDEEDEVDDEEIESFNSFSRKMQTISNSRY 207


>SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 437

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +2

Query: 314 VLEDIEKDNEDVEMSSDDENVVVDSEGGKKRVFNTKTLKDQN 439
           +LED E  N D E   DD++++      +   +N+K+LK++N
Sbjct: 6   MLEDDE--NYDFEFEDDDDDMIEPYVDVENCYYNSKSLKEEN 45


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 404 FSCRLHYRPQRFHHPNSFRRLHCPFRCLLILFC 306
           F C LH +  +  HP S  R HCPF   ++  C
Sbjct: 418 FDCGLH-KCSKTCHPISETRAHCPFATDVLTKC 449


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
            Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/28 (39%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
 Frame = +2

Query: 260  ESEQVIFLDAGDLKKS-KKVLEDIEKDN 340
            E   +++ DA  ++K+ K+V+ED+EK+N
Sbjct: 1600 EEHSIVYEDAKLMEKTLKEVIEDLEKNN 1627


>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 260 ESEQVIFLDAGDLKKSKKVLEDIEKDNEDVEMSS 361
           + E + +L   D+ K KK  E +EK N+D +  S
Sbjct: 54  QKEFLPYLTTEDVGKHKKTKESLEKSNDDSQKIS 87


>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1690

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 335  DNEDVEMSSDDENVVVDSEGGKK 403
            + EDVEM S+D++   +SE G K
Sbjct: 1322 NEEDVEMRSEDQSDTSESEVGSK 1344


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 15/56 (26%), Positives = 22/56 (39%)
 Frame = -2

Query: 294 SPASRNITCSDSITSLPAGXXSXLTPSIFFKRANAFTAYRARLSALQFAXPSCAEA 127
           SP   N+ CS  +TSL     S  TP   +  A +       +     A P  +E+
Sbjct: 398 SPLGGNMACSAGLTSLLGYHLSVKTPQATYVVARSIVMLDHLIDGYSMAFPDFSES 453


>SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 352

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 14/52 (26%), Positives = 22/52 (42%)
 Frame = +2

Query: 290 GDLKKSKKVLEDIEKDNEDVEMSSDDENVVVDSEGGKKRVFNTKTLKDQNGQ 445
           GDLKK  +V +  E    D+  S   E +   S   K R++  +      G+
Sbjct: 17  GDLKKDVEVAQPPEDSISDLAFSPQAEYLAASSWDSKVRIYEVQATGQSIGK 68


>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = +2

Query: 323 DIEKDNEDVEMSSDDENVVVDSE 391
           D+E+D +DVE SS++E  V DS+
Sbjct: 351 DVEEDEDDVESSSNEE--VSDSD 371


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,688,313
Number of Sequences: 5004
Number of extensions: 24887
Number of successful extensions: 122
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)