Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_A05
         (887 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    26   0.40 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    25   0.70 
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    24   2.1  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   6.5  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   6.5  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   8.6  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 26.2 bits (55), Expect = 0.40
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
 Frame = -3

Query: 324 DHCRHYLFPEFRFTLFDCGHNHVPGTGRRQSVQATFDXLGQRSHTRF-FAPCVVGAV 157
           D C  Y +    +T  DCG    P   +R   Q   + +  R ++ F  AP V+  +
Sbjct: 471 DQCEEYEYVHDEYTCMDCGPGKWPHEDKRGCYQLAINHI--RWNSAFAIAPAVISCL 525


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 25.4 bits (53), Expect = 0.70
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
 Frame = -3

Query: 324 DHCRHYLFPEFRFTLFDCGHNHVPGTGRRQSVQATFDXLGQRSHTRF-FAPCVVGAV 157
           D C  Y +    +T  DCG    P   +R   Q   + +  R ++ F  AP V+  +
Sbjct: 561 DQCEEYEYVYDEYTCMDCGPGKWPHEDKRGCYQLAINHI--RWNSAFAIAPAVISCL 615


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 192 TRFFAPCVVGAVDY 151
           TRF+  CVV A DY
Sbjct: 468 TRFYTACVVEAFDY 481


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -1

Query: 452 LWLQXPVMAEPFISPLLLTMTPALSSKYINTPSRLL 345
           +W+   V+   F SP    M+P +   ++N   RLL
Sbjct: 327 IWITVCVLNVHFRSPSTHNMSPWVRQVFLNWMPRLL 362


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +2

Query: 248 VPGT*LWPQSKRVNLNSGKR--*CRQWSSGSGNRS 346
           +P T LW ++ R+ +++ K+    + WS  S N +
Sbjct: 439 IPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNA 473


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 134 VSQWEQ*STAPTTQGAKNL 190
           V Q EQ   AP T G KN+
Sbjct: 805 VQQCEQLEKAPNTLGLKNM 823


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,101
Number of Sequences: 438
Number of extensions: 3939
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)