Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP04_F_A02
         (901 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    24   1.6  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   3.8  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   5.0  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   6.6  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   8.8  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   8.8  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   8.8  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = +3

Query: 411 LSDKSIIDYNDFIRNLQNNEANDQQFFFVNGQIISAVSIEEICREIDDIFKSIDRLASAT 590
           L+DK + +  D I    ++       FF+          E++ +E+D+IF   DR A+  
Sbjct: 333 LTDKEVKEQVDTIMFEGHDTTASGSSFFLAVMGCHPDIQEKVIQELDEIFGDSDRPATFQ 392

Query: 591 STL 599
            TL
Sbjct: 393 DTL 395


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -3

Query: 359 CSFLQVQSAEHCRHSRFVVFLCP 291
           C  + VQS   C   R   +LCP
Sbjct: 183 CKCIYVQSINLCMAGRLFGYLCP 205


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +3

Query: 24  PCLGCLLXXXCVTSSFSXCHLSPVVLACFSXPSTH 128
           P LG  +    +  +FS C    V+   F  P TH
Sbjct: 301 PLLGKFVLFTMILDTFSICVTVVVLNVHFRSPQTH 335


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 636 STGELSFDDTIDQIDEEKIDQCIEEAFEELS 728
           STG+++FDD  D+I  E     I+E  +++S
Sbjct: 343 STGKVAFDDNGDRIFAEYDIINIQENGDQVS 373


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 57  RXXXXGGTRGKGGX*GXT 4
           R    GG+RG+GG  G T
Sbjct: 84  RGHGKGGSRGRGGNRGRT 101


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +1

Query: 184 TLAWVQNXXPWKPS 225
           TL W  +   WKPS
Sbjct: 96  TLMWTDSHLSWKPS 109


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 402 ARQLSDKSIIDYNDFIRNLQNN 467
           A++L D  + +YN  IR + NN
Sbjct: 21  AKRLYDDLLSNYNRLIRPVSNN 42


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,058
Number of Sequences: 438
Number of extensions: 2883
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)