Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_P22
         (936 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              35   0.001
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    23   3.0  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   7.0  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 34.7 bits (76), Expect = 0.001
 Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
 Frame = +1

Query: 286 KQYEVT--FNKFDEGRDGFLDLTEVKRMMERLGAPQTHLG--LKAMISEVDEDGDNKISF 453
           K+Y V+  F+ +D   +G L+  E+++  E     +   G  L  MIS  D DGD K++ 
Sbjct: 234 KEYLVSIMFSHYDRNNNGNLEREELEQFAENEDLEELCRGCNLGHMISYDDTDGDGKLNV 293

Query: 454 REFLLIYRK 480
            EF + + K
Sbjct: 294 NEFYMAFSK 302


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = -2

Query: 167 PFNSSVAAIIYAAKNIENQFFAGLRFQRCERLXVG---ALEILKILRN 33
           PF +     +  AKN+EN+F     F    R+ +G    +E+++ LRN
Sbjct: 301 PFTAEEVNYMLKAKNMENRF---PLFTTVHRICIGETMPMELIENLRN 345


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 8/32 (25%), Positives = 18/32 (56%)
 Frame = -1

Query: 507 IHFQFTSTCFSVDEEKLSKTNLVITIFIDLRD 412
           +H     T +   + +  +++L +TI +D+RD
Sbjct: 157 LHDNKLITMYRFPQNQFKESSLFVTIAVDVRD 188


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,878
Number of Sequences: 438
Number of extensions: 4498
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30597567
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)