Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP03_F_P19
         (906 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    24   1.7  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    24   1.7  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    23   2.9  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   8.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   8.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   8.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   8.8  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 329 VHEVFETVAGKYDLMNDVMSFGI 397
           VH   E ++G YD   DV +FGI
Sbjct: 759 VHMAPELLSGHYDSSVDVYAFGI 781


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 329 VHEVFETVAGKYDLMNDVMSFGI 397
           VH   E ++G YD   DV +FGI
Sbjct: 797 VHMAPELLSGHYDSSVDVYAFGI 819


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 418 IHGSLGTNAGYQFTGYGWRDRGHYI*VHKISSKSSFK 528
           I+GS  +  G  F     R+RG+   V+++  +S F+
Sbjct: 271 IYGSNSSTVGTIFGYQDMRNRGNNFPVYQVEKRSPFR 307


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 325 LSFFIFVNSLKSKMSLVFDLFIFIVGSGLC 236
           L+FF   N  +S + +V +L    V  G+C
Sbjct: 341 LNFFTTSNGFRSTLPVVSNLTAMNVWDGVC 370


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 325 LSFFIFVNSLKSKMSLVFDLFIFIVGSGLC 236
           L+FF   N  +S + +V +L    V  G+C
Sbjct: 310 LNFFTTSNGFRSTLPVVSNLTAMNVWDGVC 339


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 325 LSFFIFVNSLKSKMSLVFDLFIFIVGSGLC 236
           L+FF   N  +S + +V +L    V  G+C
Sbjct: 361 LNFFTTSNGFRSTLPVVSNLTAMNVWDGVC 390


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 325 LSFFIFVNSLKSKMSLVFDLFIFIVGSGLC 236
           L+FF   N  +S + +V +L    V  G+C
Sbjct: 310 LNFFTTSNGFRSTLPVVSNLTAMNVWDGVC 339


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 237,935
Number of Sequences: 438
Number of extensions: 5288
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)